L'atlas agropédologique est un ensemble de cartes interactives qui montrent les caractéristiques, la fertilité, la qualité du régime hydrique, la vulnérabilité à la dégradation et le potentiel des sols et des terres agricoles situées en Montérégie dans la province de Québec.

L’Atlas agropédologique est un ensemble de couches qui montrent les caractéristiques, la fertilité, la qualité du régime hydrique, la vulnérabilité à la dégradation et le potentiel des sols et des terres agricoles situées en Montérégie dans la province de Québec. An English version is available at http://nlwis-snite1.agr.gc.ca/cgi-bin/ogc/apaq-aapq_wms_e?service=wms&request=getcapabilities

The RTC makes its data on stops, schedules and routes (“Public Information”) available in two standardized formats: * General Transit Feed Specification (GTFS) for schedule and route data * The shapefile for geospatial data on stops and routes Official page: https://www.rtcquebec.ca/donnees-ouvertes **This third party metadata element was translated using an automated translation tool (Amazon Translate).**

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S). The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined. The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute. This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems. Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of invertebrates species whose DNA has been detected in water samples collected at 2018 using the marker COI. The surveys were carried out in the summer of 2018 from August 11 to 14, between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 9-52 meters depth in 40 stations with one sample par station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissue extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. Libraries at the COI locus were prepared by Genome Quebec and sequenced on an Illumina MiSeq PE250 system. The bioinformatics analysis of the sequences obtained was carried out using an in-house analysis pipeline as reported in Bourret et al. 2022. A first step made it possible to obtain a molecular operational taxonomic unit table (MOTU) using the cutadapt software for the removal of the adapters and the DADA2 R package for the filtration, fusion, chimera removal and data compilation. The MOTUs table was subsequently corrected by taking into account the negative controls, where the number of observations in the latter was removed from the linked samples. Singleton MOTUs have also been removed. Finally, the taxonomic assignments were carried out on the MOTUs using the IDTAXA classifier (present in the DECIPHIER R package) using a training set trained on the COI reference bank for Golf St-Laurent (GSL-rl v1.0, https://github.com/GenomicsMLI-DFO/MLI_GSL-rl) and a threshold of 40. Detections with an “Unreliable due to gaps” category were reported at the genus level only. The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute. This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems. Data are also available on SLGO platform : https://doi.org/10.26071/ogsl-cd4c205b-f63b

This data report provides information on temperature and salinity in the Godbout region of the St. Lawrence Estuary. Sampling was carried out from 2019 to 2021 over an area of <5 km2. The databases provide information on temperature and salinity at an hourly rate for 2 years. The aim of this project is to analyze telemetry data from sea urchins (Strongylocentrotus droebachiensis), snow crabs (Chionoecetes opilio), rock crabs (Cancer irroratus), spider crabs (Hyas spp.) and whelks (Buccinum undatum). This report focuses on the presentation of benthic environmental data collected throughout the study with high spatial and temporal resolution. All reported variables were collected at the seafloor, as the aim of the project was to study the movement of epibenthic species. Temperature data were collected from three devices: telemetry receivers with integrated temperature sensors (InnovaseaTM), HoboTM and Star-OddiTM probes. Temperature data processing involved cleaning up extreme values (below 2°C and above 20°C) and homogenizing the data to fit the bathymetry matrix (1m x 1m cells) of the study site. Temperature data are provided in a NetCDF file with a matrix of the entire study site, where there is a stratum for each hour between August 2019 and October 2021 and in each file, a temperature value for each pixel of the raster. Salinity data were collected from Star-OddiTM probes only. Salinity values were averaged hourly for the entire study area. Salinity data is provided as a CSV file with one salinity value per hour for the entire study area.

Most of the data were collected during aerial surveys carried out at low tides during June and August 1994-1997, 2000 and 2001. June and August are respectively pupping and moulting seasons, when the haulout sites are intensively used by seals. Features in this layer show the Harbour seal distribution and the mean abundance for all aerial surveys (tables 3 and 5, figures 3 and 5 from Robillard et al. 2005). In the estuary, areas of high abundance have more than 30 individuals, areas of medium abundance have between 10 and 30 individuals and areas of low abundance have fewer than 10 individuals. In the Gulf, areas of high abundance have more than 50 individuals and areas of medium to low abundance have fewer than 50 individuals. Unpublished data obtained from Parks Canada and Sepaq were also used to identify important haulout areas in the Saguenay Fjord sector and in Pointe-aux-Vaches tidal flat sectors, which have been categorized in this dataset as high abundance areas. Data are valid only during summer (except for the Pointe-aux-Vaches flats identified as mainly frequented in autumn by Parc Canada), because spring and fall distributions of the Harbour seal are unknown. Data shown in the Estuary and the Gulf of St. Lawrence are a picture of the situation in 2005 because it is the most recent mapping available for this specie. The distribution of the Harbour seal is non-uniform among the different concentration areas but is similar between June and August. However, Harbour seals tend to decrease their presence along the south shore and the Lower Estuary in August to the benefit of the Saguenay River colonies. Abundance classes are arbitrary but fit with the published results of haulout site utilization from Robillard et al. (2005). Data sources : Parks Canada. 2021. Personal communication. Harbor seal monitoring data on the Pointe-aux-Vaches tidal flat. Parks Canada and SÉPAQ, 2020. Données du suivi du phoque commun dans le fjord du Saguenay. Unpublished data. Robillard, A., V. Lesage, and M.O. Hammill. 2005. Distribution and abundance of harbour seals (Phoca vitulina concolor) and grey seals (Halichoerus grypus) in the Estuary and Gulf of St. Lawrence, 1994–2001. Can. Tech. Rep. Fish. Aquat. Sci. 2613: 152 pp.

Stimpson's surfclam or Arctic surfclam (Mactromeris polynyma) concentration areas in this layer are described as being known and commercially exploited historically and/or currently. The mapping of these areas is based on several sources of information: exploratory fisheries, scientific surveys and fishermen's logbooks. Commercial fishery data come from three distinct sources of information: the purchase receipt, the fishermen's logbook and commercial sampling by Fisheries and Oceans Canada (DFO). All data comes from the research document published in 2015. These concentration areas are considered among the most abundant and are used for commercial fishing (note: high densities are not found strictly in these beds). This dataset does not represent the general distribution of the species nor the extent to which fishing is allowed. The extent of shellfish beds can change over time in response to, among others, harvesting and recruitment rates. The polygons might underestimate the concentration areas because fishing and sampling occur where the target resource is known to be more abundant. However, the precision is good enough for resource protection and management needs in case of an environmental incident. This information is valid until data from a most recent research survey is published. Data sources and references : DFO. 2007. Évaluation des stocks de quahog nordique (Arctica islandica) du banc de l'île de Sable et de la baie St. Mary's, et du stock de mactre de Stimpson (Mactromeris polynyma) du Banquereau. Secr. can. de consult. sci. du MPO. Avis sci. 2007/034 (Révisé). Lambert J. et P. Goudreau. 1997. Biologie et exploitation de la mactre de Stimpson (Mactromeris polynyma) sur les côtes du Québec. Sec. can. éval. stock du MPO. Doc. rech. 1997/101. 44 p. Landry, T.E., E. Wade, E. et M. Giguère. 1992. Évaluation des gisements de mactre de Stimpson, Mactromeris polynyma, dans le golfe du Saint-Laurent: résultats préliminaires. MPO, CSCPCA Doc. rech. 1992/086. 29 p. Trottier, S. et P. Goudreau. 2015. Évaluation des stocks de mactre de Stimpson (Mactromeris polynyma) des eaux côtières du Québec en 2014. Secr. can. de consult. sci. du MPO. Doc. de rech. 2016/063. Ix + 72 p.

The dataset represents known concentration areas of harvested or unharvested Atlantic surfclam (Spisula solidissima) in the Gulf of St. Lawrence, around the Magdalen Islands. The dataset was created for the National environmental emergencies center (NEEC) for preparation and response in case of an oil spill. Concentration areas were delineated using Fisheries and Oceans Canada (DFO) inventories conducted between 2000 and 2020, commercial fisheries data (logbooks and purchase receipts from 2002 to 2020 and observations at sea from 2005 to 2017), data from exploratory fisheries as well as interviews. This layer is dependent on the inventories carried out and thus only represents the known areas of the Atlantic surfclam. This dataset does not represent the general distribution of the species nor the extent to which fishing is allowed. Most of the information comes from inventories that did not necessarily target this species, therefore its distribution is undoubtedly wider than what is recorded in this layer. In addition, the extent of shellfish beds can change over time in response to, among others, harvesting and recruitment rates. Some concentration areas were delimited based on interviews with people who locally know the resource but their delimitation remains approximate. The polygons delimited based on sampling data are more precise but might underestimate the concentration areas because sampling was made where the target resource was known to be more abundant without necessarily sampling the entire bed. Nonetheless, the precision is sufficient for resource protection and management needs in case of an environmental incident. Data sources and references: Bio-Conseil. 1986. Pêche exploratoire à la palourde (Spisula solidissima) aux Îles-de-la-Madeleine, automne 1985. Rapport final, Bio-Conseil, Pêches et Océans Canada. 24 p. Bernier, L. and L. Poirier. 1979. Evaluation sommaire du stock de mactres de l'Atlantique, Spisula solidissima Dillwyn, des Îles-de-la-Madeleine (golfe du St-Laurent). Cahier d'information, ministère de l'Industrie et du Commerce. 42 p. Bourget, E. and D. Messier. 1983. Macrobenthic density, biomass, and fauna of intertidal and subtidal sand in a Magdalen Islands lagoon, Gulf of St. Lawrence. Can. J. Zool. 61(11):2509-2518. Brulotte, S. 2013. Évaluation des stocks de la mactre de l’Atlantique, Spisula solidissima, des eaux côtières des Îles-de-la-Madeleine – méthodologies et résultats. Secr. can. de consult. sci. du MPO. Doc. de rech. 2013/082: x + 58 p . Brulotte, S. 2016. Évaluation des stocks de mactre de l’Atlantique, Spisula solidissima, des Îles-de-la-Madeleine, Québec en 2015 – méthodologie et résultats. Secr. can. de consult. sci. du MPO. Doc. de rech. 2016/074. x + 51 p. DFO. 2016. Stock Assessment of Atlantic Surfclam of the Îles-de-la-Madeleine in 2015. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2016/022. DFO. 2019. Assessment of the Îles-de-la-Madeleine Atlantic Surfclam stock in 2018. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2019/031. Fréchette, M. and M. Giguère. 1984. Rapport sur une pêche exploratoire à la palourde aux Îles-de-la-Madeleine en 1984. Pêches et Océans Canada. 17 p. Hurlbut, T and D. Clay. 1990. Protocols for research vessel cruises within the Gulf region (demersal fish) (1970-1987). Can. Manuscr. Rep. Fish. Aquat. Sci. 2082:143p. Hurtubise, S. (Fisheries Data [ZIFF] and At-Sea Observers Manager). Unpublished data. Fisheries and Oceans Canada.

The dataset represents known concentration areas of harvested or unharvested Atlantic razor clam (Ensis leei) in the Estuary and the Gulf of St. Lawrence, Quebec Region. It was created for the National Environmental Emergencies Centre (NEEC) for preparation and response purposes in case of an oil spill. Concentration areas were defined using data from Fisheries and Oceans Canada (DFO) inventories, various DFO research projects and commercial fisheries data. This layer is dependent on the inventories carried out and thus only represents the known areas of the Atlantic razor clam. This dataset does not represent the general distribution of the species nor the extent to which fishing is allowed. Most of the information comes from inventories that did not necessarily target this species, therefore its distribution is undoubtedly wider than what is recorded in the layer. In addition, the extent of shellfish beds can change over time in response to, among others, harvesting and recruitment rates. Some beds were mapped based on DFO research project data which were compiled in a benthic biodiversity Access database. Polygons drawn around these data are not precise and may be reviewed. However, the precision is sufficient for the resource protection and management needs in case of an environmental incident. Data sources and references: Anonym. 1991. Analyse de l'échantillonnage en mer des mactres de Stimpson. Programme d'adaptation des pêches de l'Atlantique. Pesca tec International. Pêches et Océans Canada. 134 p. Bernier, L. and L. Poirier. 1979. Évaluation sommaire du stock de mactres de l'Atlantique, Spisula solidissima Dillwyn, des Îles-de-la-Madeleine (golfe du Saint-Laurent). Cahier d'information, ministère de l'Industrie et du Commerce. 42 p. Bourdages, H., P. Goudreau, J. Lambert, L. Landry and C. Nozères. 2012. Distribution des bivalves et gastéropodes benthiques dans les zones infralittorale et circalittorale des côtes de l’estuaire et du nord du golfe du Saint-Laurent. Rapp. tech. can. sci. halieut. aquat. 3004 : iv + 103 p. Bourget, E. and D. Messier. 1983. Macrobenthic density, biomass, and fauna of intertidal and subtidal sand in a Magdalen Islands lagoon, Gulf of St. Lawrence. Can. J. Zool. 61(11):2509-2518. Brulotte, S. Unpublished data. Fisheries and Oceans Canada. Brulotte, S. 2013. Évaluation des stocks de la mactre de l’Atlantique, Spisula solidissima, des eaux côtières des Îles-de-la-Madeleine – méthodologies et résultats. Secr. can. de consult. sci. du MPO. Doc. de rech. 2013/082: x + 58 p. Brulotte, S. 2016. Évaluation des stocks de mactre de l’Atlantique, Spisula solidissima, des Îles-de-la-Madeleine, Québec en 2015 – méthodologie et résultats. Secr. can. de consult. sci. du MPO. Doc. de rech. 2016/074. x + 51 p. Brulotte, S., M. Giguère, S. Brillon and F. Bourque. 2006. Évaluation de cinq gisements de mye commune (Mya arenaria) aux Îles-de-la-Madeleine, Québec, de 2000 à 2003. Rapp. Tech. can. Sci. halieut. Aquat. 2640 : xii + 92 p. DFO. 2013. Assessment of Razor Clam stock in Québec’s Inshore Waters in 2012. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2013/052. Elouard, B, G. Desrosiers, J.C. Brêthes and Y. Vigneault. 1983. Étude de l'habitat du poisson autour des ilots créés par des déblais de dragage; lagune de Grande-Entrée, Îles-de-la-Madeleine. Can. Tech. Rep. Fish. Aquat. Sci. 1209:viii + 69 p. Gendreau, Y. 2018. MS Access database on benthic biodiversity. Fisheries and Oceans Canada. Provencher, L. and C. Nozères. 2011. Protocole de suivi des communautés benthiques de la zone de protection marine Manicouagan. Secr. can. de consult. sci. du MPO. Doc. de rech. 2011/051:iv +25 p. Thompson, M., D. Drolet and J.H. Himmelman. 2005. Localization of infaunal prey by the sea star Leptasterias polaris. Mar. Biol. 146(5):887-894.