PURPOSE: The objective of the program is to gather environmental coastal data to better understand fluctuations in water temperature and its effect on coastal marine species. DESCRIPTION: Bottom and surface water temperatures are monitored in coastal waters of the southern Gulf of St. Lawrence using electronic recording devices attached to navigational buoys or moorings and set to record every two hours. PARAMETERS COLLECTED: temperature (environmental); point (spatial) NOTES ON QUALITY CONTROL: Data are checked for irregularities. SAMPLING METHODS: Temperature recording devices are installed by fishermen, DFO staff and, since 2000, by the Canadian Coast Guard staff. USE LIMITATION: To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Water level and discharge data are available from Water Survey of Canada’s Hydrometric Network. The Water Survey of Canada (WSC) is the national authority responsible for the collection, interpretation and dissemination of standardized water resource data and information in Canada. In partnership with the provinces, territories and other agencies, WSC operates over 2500 active hydrometric gauges across the country, maintains an archive of historical information for over 7600 stations and provides access to near real-time (water level and stream flow) provisional data at over 1700 locations in Canada.

PURPOSE: This data relates to the Canadian Science Advice Secretariat (CSAS) Regional Science Advisory Process from the Limit Reference Point and Population Model Review of the Southern Gulf of Saint Lawrence Sea Scallop peer review meeting held on November 1-2, 2023. The SFAs 22 and 24 have been identified as the core scallop habitat within the sGSL for this process. Associated publications from this meeting will be posted on the Fisheries and Oceans Canada (DFO) Science Advisory Schedule as they become available. DESCRIPTION: Data on landings, fishing efforts, and catch per unit effort (CPUE) used in the stock assessment for southern Gulf of St. Lawrence (sGSL) sea scallop (_Placopecten magellanicus_) stock assessments and the limit reference point. The dataset contains corrected information from the following data sources: - DFO annual historic reports on landings and efforts - published documents about population assessments and surveys - logbooks, produced by DFO’s regional statistics - purchase slips, produced by DFO’s regional statistics - Catch per unit effort calculated by DFO's Science Branch Prior to 1947, data represents the combined landings that cannot be attributed to individual Scallop Fishing Areas (SFAs). USE LIMITATION: To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

A research survey on snow crab (Chionoecetes opilio) was conducted from July 1 to July 17, 2018 on the Lower North Shore of the Gulf of St. Lawrence between Havre-Saint-Pierre and Blanc-Sablon. The main objective of this survey was to assess the abundance of snow crab and benthic species associated with snow crab habitat. Only data for benthic species associated with snow crab habitat are presented in this dataset. Data were collected according to a fixed station sampling design consisting of 61 stations, between 46 and 230 meters depth. Specimens were collected using a beam trawl with a total width of 2.8 meters and a total height of 0.76 meters. The codend was lined with a 16 millimeter stretched mesh net in order to harvest the small individuals. The hauls were made at a target speed of 2 knots and a target duration of 10 minutes depending on seabed conditions. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library in R. The average tow distance was approximately 25 m. The area covered at each tow was the product of the trawl opening and the distance traveled. The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "Activity_Information" file includes generic activity information, including date and location. The "occurrence_taxon" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. To obtain the abundance and biomass assessment, contact Cedric Juillet (cedric.juillet@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "ScientificIDname" field of the occurrence file. Special cases were noted in the "commentsIdentification" field and selected specimens were confirmed with field photos. Data quality checks were performed using the R obistools and Worms libraries. All sampling locations were spatially validated.

With the changing climate conditions, marine traffic along Canada’s coastal regions has increased over the past couple of decades and the need to improve our state of preparedness for oil-spill-related emergencies is critical. Baseline coastal information, such as shoreline form, substrate, and vegetation type, is required for prioritizing operations, coordinating onsite spill response activities (i.e. Shoreline Cleanup Assessment Technique [SCAT]), and providing information for wildlife and ecosystem management. Between 2010 and 2016, georeferenced high-definition videography and photos were collected for various study sites along the north coast of Canada. The study areas include Beaufort Sea, Mackenzie Delta channels and Banks Island in the western Canadian Arctic and James Bay, Hudson Bay, Nunavik, Resolute Bay, Victoria Strait, Baffin Island and Coronation Gulf in the eastern Canadian Arctic. Data was collected during ice-free and low tide conditions (where applicable) between July and September. Low-altitude helicopter surveys were conducted at each study site to capture video of the shoreline characteristics. In addition to acquiring videography, ground-based observations were recorded in several locations for validation. Shoreline segmentation was then carried out by manual interpretation of the oblique videography and the photos aided by ancillary data. This involved splitting and classifying the shoreline vectors based on homogeneity of the upper intertidal zone. Detailed geomorphological information (i.e. shoreline type, substrate, slope, height, accessibility etc.) describing the upper intertidal, lower intertidal, supratidal and backshore zones was extracted from the video and entered into a geospatial database using a customized data collection form. In addition, biological characteristics like biobands, water features, fauna, human use etc. observed along the coast were recorded. The data was also validated through ground observations (when available) and a second interpreter QA (quality analysis) was performed on each dataset (excluding Nunavik) to ensure high quality and consistency. The final dataset contains segments ranging in length from 150 metres to 2500 metres. In total, from 2010 to 2016, within the 8 study sites, about 16,800 km of shoreline were segmented.

The contaminants in fish database is a compilation of contaminant data analysed from fish tissue at the Fresh Water Institute from 1970 to 2005. Data include lab number, region, analysis, organs, species, lake, form (whole fish, headon dressed, headless dressed), weight, and length and contaminant concentrations. Total mercury was the predominant contaminant measured. Results were expressed as ppm or ppb based on the parameter analyzed. Concentrations are expressed based on wet weight.

Summary The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities. Data This dataset on the Atlantic lyre crab (Hyas araneus) includes the metadata, sample weight, specimen weight, shell width and condition, sex and the right claw height of the specimens measured. This dataset covers the period of 2002 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel for a given year and a fishing area were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

From August 5th to September 3rd, 2012, Fisheries and Oceans Canada conducted a baseline survey of marine fishes and their habitats on the Canadian Beaufort Shelf and slope. Sampling was conducted from the F/V Frosti at 28 stations along four transects. Standardized sampling was conducted at pre-determined depth stations (20-40, 75, 200, 350, 500, 750, and 1000 m) using a variety of sampling equipment including benthic fishing trawls, plankton nets, sediment cores, and CTD and water sample profiles. A specialized CTD probe (UCTD) was deployed at an additional 30 locations while the ship was underway. Presented here is the information on the sampling locations, and the sampling gear deployed at each station.

Cold-water corals are conspicuous in the waters off Eastern Canada. Despite that, there are few DNA sequence records from specimens collected in the region available in GenBank, and not all species recorded in the region have sequence data regardless of geographic origin. This can limit the use of eDNA techniques to detect and identify corals. Our objective was to sequence and publish sequences for two octocoral DNA barcoding markers: CO1 and MutS. We sequenced and deposited 36 sequences to GenBank from 19 specimens representing three sea pen taxa (Octocorallia: Pennatuloidea): Distichoptilum gracile, Pennatula aculeata, and Protoptilum carpenteri. Identification of all specimens was confirmed by B. M. Neves before submission. Specimens and DNA tissues were donated to the Canadian Museum of Nature, where they are currently stored. This publication is part 1 of a series of GenBank submissions by our lab. Specimens were collected from across the Northwest Atlantic and originate from depths ranging between 200-1924 meters. Specimens were collected as part of research vessel multispecies trawl surveys or remotely operated vehicle (ROV ROPOS) surveys. DNA was isolated and purified using the QIAgen DNeasy Blood and Tissue kit, with an initial overnight incubation with Proteinase K. Two commonly used octocoral barcoding regions were amplified using previously described primers: 1) COII8068F (McFadden et al., 2004) and COIOCTR (France and Hoover, 2002) for the CO1 gene, and 2) ND42599F (France and Hoover, 2002) and mut3458R (Sánchez et al., 2003) for the MutS gene. Amplifications were conducted using 12.5 µl of Green DreamTaq Master Mix (Thermo Fisher Scientific), 1 µl of template DNA, 0.5 µl of each 10 µM forward and reverse primers, 0.5 µl of 10 µM reverse primer, and 10.5 µl of water. Thermocycling was run as follows: 3 min of initial denaturation at 95 °C, followed by 40 cycles at 95 °C for 30 s, 30 s at annealing temperature of 48 °C, then 65 s at an extension temperature of 72 °C, and a final elongation at 72 °C for 4 min. PCR products were cleaned using Agencourt AMPure XP Beads (Beckman Coulter) and sent to The Center for Advanced Genomics, Toronto, Canada for Sanger sequencing. Sequences were visualized and aligned using Geneious Prime 2022.0.2. Obtained sequences have been deposited in GenBank under accession numbers OQ569768- OQ569784 and OQ420359- OQ420377. This work was funded by Fisheries and Oceans Canada under an Enhanced Regional Capacity grant (2020-2021) and the Marine Conservation Targets (MCT) program (2021-2024), Newfoundland and Labrador Region.

From August 6th to September 9th, 2014, Fisheries and Oceans Canada conducted a baseline survey of marine fishes and their habitats on the Canadian Beaufort Shelf and slope. Sampling was conducted from the F/V Frosti at 56 stations along thirteen transects, with an additional three stations not located on transects. Standardized sampling was conducted on the transects at pre-determined depth stations (20-40, 75, 200, 350, 500, 750, and 1000 m) using a variety of sampling equipment including benthic fishing trawls, plankton nets, sediment cores, and CTD and water sample profiles. Presented here is the information on the sampling locations, and the sampling gear deployed at each station.