Polygons denoting concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations and the area occupied by successive catch weight thresholds was used to identify aggregations. These analyses were performed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures. These polygons identify large gorgonian coral fields from the broader distribution of large gorgonian corals in the region as sampled by Western II A trawl gear in the Scotian Shelf biogeographic zone. A 0.5 kg minimum threshold for the large gorgonian coral catch was identified as the weight that separated the large gorgonian field habitat from the broader distribution of large gorgonian corals with these research vessel tow data and gear type.

A coastal surficial substrate layer for the coastal Scotian Shelf and Bay of Fundy. To create the layer, previous geological characterizations from NRCan were translated into consistent substrate and habitat characterizations; including surficial grain size and primary habitat type. In areas where no geological description was available, data including digital elevation models and substrate samples from NRCan, CHS and DFO Science were interpreted to produce a regional scale substrate and habitat characterization. Each characterization in the layer was given a ranking of confidence and original data resolution to ensure that decision makers are informed of the quality and scale of data that went into each interpretation. Cite this data as: Greenlaw, M., Harvey, C. Data of: A substrate classification for the Inshore Scotian Shelf and Bay of Fundy, Maritimes Region. Published: March 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/f2c493e4-ceaa-11eb-be59-1860247f53e3

Polygons denoting concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations and the area occupied by successive catch weight thresholds was used to identify aggregations. These analyses were performed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures. These polygons identify sea pen fields from the broader distribution of sea pens in the region as sampled by Western II A trawl gear in the Scotian Shelf biogeographic zone. A 0.1 kg minimum threshold for the sea pen catch was identified as the weight that separated the sea pen field habitat from the broader distribution of sea pens with these research vessel tow data and gear type.

Polygons denoting concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations and the area occupied by successive catch weight thresholds was used to identify aggregations. These analyses were performed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures. These polygons identify sponge grounds from the broader distribution of sponges in the region as sampled by Western II A trawl gear in the Scotian Shelf biogeographic zone. A 2 kg minimum threshold for the sponge catch was identified as the weight that separated the sponge ground habitat from the broader distribution of sponges with these research vessel tow data and gear type.

The lobster recruitment project is run by the Fishermen and Scientist Research Society (FSRS) through DFO funding. Fishermen participating in the lobster recruitment project collect information about lobster in their fishing area by fishing 2-5 scientific project traps (SPTs) (fished in fixed locations) within the regular commercial season. The SPTs used in all fishing areas are smaller than commercial traps and designed to primarily catch juvenile lobsters below the legal-size limit. These traps are additional to the vessel's legal number of commercial traps. The lobster recruitment project has more than 120 fishers participating from all LFAs along the Atlantic coast of Nova Scotia from LFA 27 in Cape Breton to LFA 35 in the Bay of Fundy (excluding LFA 28, who have not participated to-date). The number of fishermen per LFA and number of SPTs per fisherman are decided on by the LFA Advisory Committees. This decision considers how much additional effort they were comfortable having in the LFA (i.e. number of SPTs) and from how many traps each fisher could be reasonably expected to collect data. It is also important to have fishers dispersed enough to maximize study footprint. DFO Science consults on project design. SAMPLING METHODS: The fishers record the number, sex and length of lobsters captured in each SPT, as well as presence of eggs, tags or v-notch. Bottom temperatures are monitored by placing a temperature recorder in one of their SPTs for the entire lobster season. Cite this data as: Tibbets-Scott, S., Zisserson, B. Data of: Fishermen and Scientist Research Society (FSRS) Lobster Recruitment Trap Project. Published: November 2020. Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/a88f9b4d-b59a-44f6-ae7e-d36550266940

The large, habitat-forming bubblegum coral, Paragorgia arborea, is a vulnerable marine ecosystem indicator with an antitropical distribution. Dense aggregations of the species have been protected from bottom-contact fishing in the Scotian Shelf bioregion off Nova Scotia, Canada in the northwest Atlantic Ocean. Recently, basin-scale habitat suitability ensemble modeling has projected an alarming loss of 99% of suitable habitat for this species across the North Atlantic by 2100. Here, a regional reassessment of the predicted distribution of this species in the bioregion, using both machine learning (random forest) and generalized additive model (GAM) frameworks, including projection to 2046−2065, was undertaken. Extrapolation diagnostics were applied to determine the degree to which the models projected into novel covariate space (i.e., extrapolation) in order to avoid erroneous inferences. The best predictors of the species’ distribution were a suite of temporally-invariant terrain variables that identified suitable habitat along the upper continental slope. Additional predictors, projected to vary with future ocean climatologies, identified areas of the upper slope in the eastern portion of the study area that will remain within suitable ranges for P. arborea at least through to the mid-century. Additionally, 3-D Lagrangian particle tracking simulations indicated potential for both connectivity among known occurrence sites and existing protected areas, and for colonization of unsurveyed areas predicted to have suitable habitat, from locations of known occurrence. These results showed that extirpation of this iconic species from the Scotian Shelf bioregion is unlikely over the next decades. Potential climate refugia were identified and results presented in the context of protected area network design properties of representativity, connectivity, adequacy, viability and resilience. Here we provide the interpolated environmental predictor variables used in present day and future species distribution models. Predicted surfaces from random forest (RF) and generalized additive models (GAM) are provided for present day and projected (RCP4.5 and RCP8.5 2045-2065) time frames. Outputs after applying extrapolation diagnostic tools (calculated using the R package dsmextra) are provided for each model. Climate change refugia for this species under the RCP4.5 2045-2065 projections showing analogue conditions are also provided. Explanations for the surfaces can be found in Wang, Murillo & Kenchington (2022) and in the associated supplementary files. Reference: Wang S, Murillo FJ and Kenchington E (2022) Climate-Change Refugia for the Bubblegum Coral Paragorgia Arborea in the Northwest Atlantic. Front. Mar. Sci. 9:863693. doi: 10.3389/fmars.2022.863693

Concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations. These analyses were performed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures.

PURPOSE: The purpose of this work was to determine (1) how the population genomic structure relates to gut microbiota composition of White Hake (Urophycis tenuis), and (2) whether microbiota community variation provides complementary insights into population structure of this species in eastern Canada. DESCRIPTION: Integrating host-associated microbiota with genomic approaches offers an opportunity to better understand the multiple biological dimensions shaping population structure in marine fishes. A clear understanding of population structure and dynamics is essential for informed fisheries management and conservation decisions; however, while genomic approaches have greatly improved our ability to delineate biological populations, they provide only a partial representation of biological structure, as patterns of differentiation reflect both historical divergence and contemporary ecological conditions. Host-associated microbiota can influence population-level ecological processes by contributing functional, potentially heritable variation that shapes host phenotype and fitness. In this study, we combined genotyping-by-sequencing with 16S rRNA gene amplicon sequencing to examine how population genomic structure relates to gut microbiota composition and to evaluate whether microbiota community variation provides complementary insights into population structure in White Hake (Urophycis tenuis) in eastern Canada. Genomic analyses identified two populations with greater spatial overlap than previously reported. Variation partitioning revealed that host genetics explained a negligible proportion of microbiota variation compared to environmental factors and fish length, suggesting that ontogenetic shifts in habitat use and resource acquisition influence gut microbiota composition. Several taxa were differentially abundant among fish length categories used as a proxy for diet, including taxa with chitin-degrading potential such as Photobacterium and Lachnospirales, which were enriched in smaller fish known to consume a crustacean-dominated diet. Together, these results indicate that gut microbiota composition in White Hake primarily reflects ecological and life-history processes rather than host population structure. PARAMETERS COLLECTED: Environmental parameters were also collected at most sampling sites, including depth, water temperature, oxygen and salinity levels. PHYSICAL SAMPLE DETAILS: Fin samples were collected to characterize the fish genotypes. Intestine (rectum) samples were collected to study fish gut microbiome. SAMPLING METHODS: In 2022 and 2023, White Hake were sampled during Fisheries and Oceans Canada (DFO) annual bottom trawl ecosystem monitoring surveys. USE LIMITATION: To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Exposure to wind-driven waves manifests an important physical gradient in the coastal zone that influences a variety of physical and biological processes (i.e., species distribution). Fetch, the unobstructed distance over which wind-driven waves can build, is a popular proxy for wave exposure at a given location commonly used for site-specific evaluations. Here, we provide two measures of fetch (unweighted fetch, effective fetch) and three fetch-derived indices of wave exposure (sum fetch, minimum fetch, and a relative exposure index) covering the coastal zones of two Canadian bioregions (Scotian Shelf-Bay of Fundy, Newfoundland-Labrador Shelves). For each region, we calculated fetch and exposure indices for input points in an evenly spaced fishnet grid (see linked records below for datasets by region). We provide unweighted fetch lengths (m) for 32 compass headings per input point (11.25° intervals), and effective fetch lengths for 8 headings per point (45° intervals). Effective fetch is a weighted average of multiple fetch measures around a given heading that reduces the influence of irregular coastline shape on exposure estimates. We also include calculations of the summed and minimum unweighted fetch lengths for each point that provide coarse proxies of exposure and distance to land, respectively. The relative exposure index (REI), provided as regional spatial layers in raster format, provides a more accurate metric of exposure by combining effective fetch with modelled wind speeds (m s-1) and frequency data. Users may also use fetch calculations to derive their own exposure layers using alternative sources of wind data, indices, or formulations. Detailed methodology on the calculations for fetch, effective fetch and REI are outlined in the Supplementary Information below. Citation information and differences in data pre-processing methods and spatial resolution of the regional analyses are described in their respective data records. The broad spatial coverage and high resolution offered by these indices are suitable to support regional-scale modelling and planning exercises. In particular, these indices will be of value to ongoing Marine Spatial Planning efforts, which includes regional conservation planning, that seek to evaluate the distribution of coastal species and overlap with human activities.