Species Distribution Models (SDM) were used to predict and identify priority areas for enhanced monitoring of cetaceans in eastern Canadian waters off Nova Scotia, Newfoundland and Labrador. This data set represents information presented in Gomez et al. (2020) and includes sighting records and SDM outputs for ten cetacean species with sufficient records (n > 450) and sightings only for an additional six species. For more information about sighting records including which were included in each SDM, please see Gomez et al. 2020. This study used a compilation of aerial- and vessel-based cetacean sightings data from 1975-2015 assembled in Gomez et al. (2017) from variety of sources. Note that sightings data from many of these sources are not effort-corrected and apparent distribution patterns based on these opportunistic sightings data are biased by when and where survey activities were conducted. Unfavorable weather and reduced visual effort in winter, spring, and autumn likely account for the fewer sighting records in these seasons compared to summer. The dataset does not include dead animal, stranding, entanglement or entrapment data. While some of the databases include records obtained during the whaling period (catches or sightings recorded prior to 1975), for all analyses/modelling conducted in this study, only sightings of free-swimming whales obtained during the post-whaling period (1975-2015) were used. Quality control checks included discarding all records outside of our study area and removing redundant records (identical species, day, month, latitude and longitude).The data used do not reflect any updates or corrections to the databases that have occurred since the data were compiled in 2016. Sightings are not available for download here, please contact the original data sources listed below to obtain raw sightings data. This study represents an important initiative in eastern Canada to highlight key areas for cetacean monitoring in waters off Nova Scotia, Newfoundland and Labrador. Habitats with high suitability are interpreted as areas where cetacean monitoring efforts may be prioritized, and results can help direct future survey efforts. These model outputs used cetacean sightings from several decades and dynamic environmental predictors that used seasonal averages across multiple years. As proxies for prey availability, five predictor environmental variables were selected for the SDM: ocean depth, compound topographic index, sea surface temperature, areas of persistently high chlorophyll-a concentration, and regional chlorophyll-a magnitude. See Gomez et al. (2020) for further details on modelling methods. Persistent patterns over time (between 1975-2015) are the main patterns expected to be captured by these models. Further, SDM results presented here are not the same as species density maps; rather, they portray predicted suitable habitat based on environmental characteristics and sightings data that were not always derived from effort-based surveys. Consequently, the use of these models in marine spatial planning processes should be accompanied by complimentary approaches such as acoustic and visual validation of the SDM results as well as additional monitoring and modeling efforts. Please refer to Gomez et al. (2020) for examples on how to best use these data outputs. Future efforts will focus on using more recent data and improving these models to facilitate the inclusion of cetaceans in marine spatial planning processes that are currently underway. Data sources: Fisheries and Oceans Canada Maritimes region and Newfoundland and Labrador region (Whale Sightings Database, Ocean and Ecosystem Sciences Division, Dartmouth, NS; http://www.inter.dfo-mpo.gc.ca/Maritimes/SABS/popec/sara/Database, MacDonald et. al. 2017) Ocean Biogeographic Information System (OBIS; http://www.iobis.org/), North Atlantic Right Whale Consortium (NARWC; http://www.narwc.org/) Whitehead Lab at Dalhousie University (http://whitelab.biology.dal.ca/) Environment and Climate Change Canada’s (Canadian Wildlife Service) Eastern Canada Seabirds at Sea (ECSAS) program (Gjerdrum et al. 2012). References: Gomez, C., Konrad, C.M., Vanderlaan, A., Moors-Murphy, H.B., Marotte, E., Lawson, J., Kouwenberg, A-L., Fuentes-Yaco, C., Buren, A. 2020. Identifying priority areas to enhance monitoring of cetaceans in the Northwest Atlantic Ocean. Can. Tech. Rep. Fish. Aquat. Sci. 3370: vi + 103 p. http://waves-vagues.dfo-mpo.gc.ca/Library/40869155.pdf Gomez C, Lawson J, Kouwenberg A, Moors-Murphy H, Buren A, Fuentes-Yaco C, Marotte E, Wiersma YF, Wimmer T. 2017. Predicted distribution of whales at risk: identifying priority areas to enhance cetacean monitoring in the Northwest Atlantic Ocean. Endangered Species Research 32:437-458 https://www.int-res.com/abstracts/esr/v32/p437-458/ Gjerdrum, C., D.A. Fifield, and S.I. Wilhelm. 2012. Eastern Canada Seabirds at Sea (ECSAS) standardized protocol for pelagic seabird surveys from moving and stationary platforms. 31 Canadian Wildlife Service Technical Report Series No. 515. Atlantic Region. vi + 37 p. MacDonald, D., Emery, P., Themelis, D., Smedbol, R.K., Harris, L.E., and McCurdy, Q. 2017. Marine mammal and pelagic animal sightings (Whalesightings) database: a user’s guide. Can. Tech. Rep. Fish. Aquat. Sci. 3244: v + 44 p.

Kernel density estimation (KDE) utilizes spatially explicit data to model the distribution of a variable of interest. It is a simple non-parametric neighbour-based smoothing function that relies on few assumptions about the structure of the observed data. It has been used in ecology to identify hotspots, that is, areas of relatively high biomass/abundance, and in 2010 was used by Fisheries and Oceans Canada to delineate significant concentrations of corals and sponges. The same approach has been used successfully in the Northwest Atlantic Fisheries Organization (NAFO) Regulatory Area. Here, we update the previous analyses with the catch records from up to 5 additional years of trawl survey data from Eastern Canada, including the Gulf of Saint Lawrence. We applied kernel density estimation to create a modelled biomass surface for each of sponges, small and large gorgonian corals, and sea pens, and applied an aerial expansion method to identify significant concentrations of these taxa. We compared our results to those obtained previously and provided maps of significant concentrations as well as point data co-ordinates for catches above the threshold values used to construct the significant area polygons. The borders of the polygons can be refined using knowledge of null catches and species distribution models of species presence/absence and/or biomass.

The objective of the study was to describe the spatial distribution of krill in eastern Canadian waters using a statistical modelling approach in support of the identification of important habitat for the western North Atlantic (WNA) blue whale (Balaenoptera musculus). Generalized Additive Models (GAMs) were used to predict ‘Significant Aggregations of Krill’ (SAK), i.e., areas where dense krill aggregations would have a greater probability of occurring. SAK cover less than 2% of the entire spatial domain and their location varied among krill categories and seasons. These SAK are interpreted as areas where environmental conditions promote krill aggregation on a regular basis and therefore are potentially important for WNA blue whale foraging in eastern Canadian waters. Plourde, S., Lehoux, C., McQuinn, I.H., and Lesage, V. 2016. Describing krill distribution in the western North Atlantic using statistical habitat models. DFO Can. Sci. Advis. Sec. Res. Doc. 2016/111. v + 34 p.

Deep arctic sponge aggregations. This habitat can be described as a type of deep-sea sponge aggregation (sensu OSPAR 2010) occurring only in the deeper, colder water (Arctic modified, and Norwegian Sea Deep Water), where glass sponges (class Hexactinellida) are typical and other strictly deep-sea sponges are common. One of the most common species of glass sponge is the Caulophacus arcticus, which is generally found on hard sea bottoms on the lower part of the continental slope.

Likelihood of Presence of Bottlenose Whales in the Bay of Fundy and the Port Hawkesbury Area Response Plan. The Coastal Oceanography and Ecosystem Research section (DFO Science) reviewed reported opportunistic whale sightings and local knowledge sources to estimate areas where Northern Bottlenose Whales are seasonally present and delineate these areas. A version of this dataset was created for the National Environmental Emergency Center (NEEC) following their data model and is available for download in the Resources section. Cite this data as: Lazin, G., Hamer, A.,Corrigan, S., Bower, B., and Harvey, C. Data of: Likelihood of presence of Bottlenose Whale in Area Response Planning pilot areas. Published: June 2018. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/29dd835b-7c96-4c62-b558-275dfe13cbe9

The Coastal Oceanography and Ecosystem Research section (DFO Science) reviewed the presence of Lobster in the Population Ecology Division (DFO Science) Ecosystem Survey trawls to describe the likelihood of presence. The survey consists of a stratified random design using a bottom trawl. Lobsters are found in few trawls in the Bay of Fundy and Port Hawkesbury Area Response Plan regions, however Lobsters are landed in nearshore areas. Therefore, lobsters are described as being likely present throughout the ARP. This layer was created for consideration in oil spill response planning. A version of this dataset was created for the National Environmental Emergency Center (NEEC) following their data model and is available for download in the Resources section. Cite this data as: Lazin, G., Hamer, A.,Corrigan, S., Bower, B., and Harvey, C. Data of: Likelihood of presence of American Lobster in Area Response Planning pilot areas. Published: June 2018. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/47bf4555-ce3c-492f-a367-a6eab1862970

The Scotian Shelf population of northern bottlenose whales (Hyperoodon ampullatus) is listed as Endangered under Canada’s Species at Risk Act. Partial critical habitat was identified for this population in the Recovery Strategy first published in 2010 (Fisheries and Oceans Canada 2016), and three critical habitat areas were designated along the eastern Scotian Shelf, encompassing the Gully, Shortland Canyon, and Haldimand Canyon (shapefile available online: https://open.canada.ca/data/en/dataset/db177a8c-5d7d-49eb-8290-31e6a45d786c). However, the Recovery Strategy recognized that additional areas may constitute critical habitat for the population and recommended further studies based on acoustic and visual monitoring to assess the importance of inter-canyon areas as foraging habitat and transit corridors for northern bottlenose whales. In a subsequent study of the distribution, movements, and habitat use of northern bottlenose whales on the eastern Scotian Shelf (Stanistreet et al. in press), several sources of data were assessed and additional important habitat was identified in the inter-canyon areas located between the Gully, Shortland Canyon, and Haldimand Canyon (DFO 2020). A summary of the data inputs, analyses, and limitations is provided below. Year-round passive acoustic monitoring conducted with bottom-mounted recorders at two inter-canyon sites from 2012-2014 revealed the presence and foraging activity of northern bottlenose whales in these areas throughout much of the year, with a seasonal peak in acoustic detections during the spring. Detections from acoustic recordings collected during vessel-based surveys provided additional evidence of species occurrence in inter-canyon areas during the summer months. Photo-identification data collected in the Gully, Shortland, and Haldimand canyons between 2001 and 2017 were used to model the residency and movement patterns of northern bottlenose whales within and between the canyons, and demonstrated that individuals regularly moved between the three canyons as well as to and from outside areas. Together, these results indicated a strong degree of connectivity between the Gully, Shortland, and Haldimand canyons, and provided evidence that the inter-canyon areas function as important foraging habitat and movement corridors for Scotian Shelf northern bottlenose whales. The inter-canyon habitat area polygon was delineated using the 500 m depth contour and straight lines connecting the southeast corners of the existing critical habitat areas, but these boundaries are based on limited spatial information on the presence of northern bottlenose whales in deeper waters. More data are needed to determine whether this area fully encompasses important inter-canyon habitat, particularly in regard to the deeper southeastern boundary. Similarly, the full extent of important habitat for Scotian Shelf northern bottlenose whales remains unknown, and potential critical habitat areas outside the canyons and inter-canyon areas on the eastern Scotian Shelf have not been fully assessed. See DFO (2020) for further information. References: DFO. 2020. Assessment of the Distribution, Movements, and Habitat Use of Northern Bottlenose Whales on the Scotian Shelf to Support the Identification of Important Habitat. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2020/008. https://www.dfo-mpo.gc.ca/csas-sccs/Publications/SAR-AS/2020/2020_008-eng.html Fisheries and Oceans Canada. 2016. Recovery Strategy for the Northern Bottlenose Whale, (Hyperoodan ampullatus), Scotian Shelf population, in Atlantic Canadian Waters [Final]. Species at Risk Act Recovery Strategy Series. Fisheries and Oceans Canada, Ottawa. vii + 70 pp. https://www.canada.ca/en/environment-climate-change/services/species-risk-public-registry/recovery-strategies/northern-bottlenose-whale-scotian-shelf.html Stanistreet, J.E., Feyrer, L.J., and Moors-Murphy, H.B. In press. Distribution, movements, and habitat use of northern bottlenose whales (Hyperoodon ampullatus) on the Scotian Shelf. DFO Can. Sci. Advis. Sec. Res. Doc. [https://publications.gc.ca/collections/collection_2022/mpo-dfo/fs70-5/Fs70-5-2021-074-eng.pdf] Cite this data as: Stanistreet, J.E., Feyrer, L.J., and Moors-Murphy, H.B. Data of: Northern bottlenose whale important habitat in inter-canyon areas on the eastern Scotian Shelf. Published: June 2021. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/9fd7d004-970c-11eb-a2f3-1860247f53e3

A benthic imagery survey was conducted along the Eastern Scotian Slope in June 2018 to collect data in support of a Strategic Program for Ecosystem-Based Research and Advice project to evaluate the effectiveness of the Lophelia Coral Conservation Area and identify new areas of importance for benthic species that may qualify for protection under Fisheries and Oceans Canada’s 2009 Policy for Managing the Impact of Fishing on Sensitive Benthic Areas. Linear video and photographic transects from ~200 to 1000 m depth were collected at 10 stations between the Gully Marine Protected Area and the Lophelia Coral Conservation Area using the video and photographic camera system Campod and the ‘4K Camera’ drop camera system. Here we present a quantitative assessment of the corals and sponges observed at each of these 10 stations. Patterns in distribution by transect and depth are presented, as well as the relationship between coral distribution and groundfish fishing effort. We highlight the importance of the slope outside the canyons for the distribution of corals and sponges, where nearly 25 taxa were recorded between 167 – 970 m depth. Diversity and abundance appeared to show a west-to-east gradient across the study area, being highest on those stations adjacent to the Lophelia Coral Conservation Area. Groundfish fishing activity overlapped the distribution of corals and sponges in some parts of the study area, particularly between 200 and 500 m where the large branching corals Paragorgia arborea and Primnoa resedaeformis were observed, and also suggested that fishing may have taken place within the boundaries of the Lophelia Coral Conservation Area since its implementation in 2004. An extension of the boundaries of this closure may ensure its continued effectiveness and provide protection for the diverse and abundant coral and sponge communities that reside beyond its boundaries. Cite this data as: Beazley, Lindsay; Lirette, Camille; Guijarro, Javier (2019). Characterization of the Corals and Sponges of the Eastern Scotian Slope from a Benthic Imagery Survey. Published July 2023. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/b6567b77-4fda-4fcf-b059-fcfeb4dcc2fb

Marine Protected Areas require comprehensive monitoring to ensure objectives are achieved; however, monitoring natural ecosystems at scale is challenged by the biodiversity it aims to measure. Environmental DNA (eDNA) metabarcoding holds promise to address this monitoring challenge. We conducted paired sampling at 54 sites for fish and invertebrate assemblages in the Northwest Atlantic using groundfish trawls and eDNA metabarcoding of benthic seawater using four genetic markers (12S rRNA, 16S rRNA, 18S rRNA, and CO1). Compared to trawling, eDNA detected similar patterns of species turnover, larger estimates of gamma diversity, and smaller estimates of alpha diversity. A total of 63.6% (42/66) of fish species captured by trawling were detected by eDNA, along with an additional 26 species. Of the 24 missed detections by eDNA, 12 were inevitable as they lacked reference sequences. Excluding taxa assigned to higher than species level and those without a species name, 23.6% (17/72) of invertebrate species captured by trawling were detected by CO1, which detected an additional 98 species. We demonstrate that eDNA is capable of detecting patterns of community assemblage and species turnover in an offshore environment, emphasizing its strong potential for a non-invasive, comprehensive, and scalable tool for biodiversity monitoring supporting marine conservation programmes. Cite this data as: Jeffery, N., Rubidge, E., Abbott, C., Westfall, K., Stanley, R. (2024): Data of: eDNA metabarcoding enriches traditional trawl survey data for monitoring biodiversity in the marine environment. Published: August 2024. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/43a91ba7-8025-4330-88db-db14022d729d

This dataset contains the results of work undertaken in 2019, 2020, 2021 and 2022 to scope the extent of the spread of Smallmouth Bass in parts of the Miramichi River Watershed using an eDNA-based species-specific qPCR approach.