The St. Lawrence Estuary is known as a summer foraging area for several species of marine mammals, including several species of rorquals. Among these is the blue whale, which feeds almost exclusively on euphausiids. Therefore, the abundance, distribution and local density of krill should logically be a strong explanatory variable for the distribution of blue whales. However little is known about the spatial association of blue whales with the aggregation dynamics of krill in eastern Canada. Six years of acoustic surveys, conducted in August from 2009 to 2014, were undertaken to study the medium- and small-scale distribution of krill within the northwestern Gulf of St. Lawrence and estuary. The data shows a mosaic of the maximum annual density of arctic krill (T. raschii) made from these surveys. McQuinn, I.H., Gosselin, J.-F., Bourassa, M.-N., Mosnier, A., St-Pierre, J.-F., Plourde, S., Lesage, V., Raymond, A. 2016. The spatial association of blue whales (Balaenoptera musculus) with krill patches (Thysanoessa spp. and Meganyctiphanes norvegica) in the estuary and northwestern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2016/104. iv + 19 p.

Deep water (> 200 m) dissolved oxygen interpolated on a grid cell of 10 km x10 km in the Estuary and Gulf of St. Lawrence. Input data are from the annual August multidisciplinary survey hold in 2014 to 2023. Purpose Since 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. These surveys are an important source of information about the status of the marine ressources. The objectives of the survey are multiple: to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and the northern Gulf and finally, to describe the environmental conditions observed in August in the sampling area. Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p. Supplemental Information The bottom dissolved oxygen is determined from a CTD profile in the water column according to AZMP sampling protocol: Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

Summary The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities. Data This dataset on the snow crab (Chionoecetes opilio) includes the metadata, sample weight, specimen weight, shell width and condition, sex and the right claw height of the specimens measured. This dataset covers the periods of 1984-2003 and 2005 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Krill is a generic name for crustaceans of the order Euphausiids, most of which are known to be Thysanoessa raschii and Meganyctiphanes norvegica in eastern Canada. Krill is an important food resource for many marine mammals, in particular the blue whale. The maps show the points of high krill concentration per month from April to November. Each point gives the number of years of high aggregation probability (6 to 10 years). The data were produced from a mathematical model developed in Plourde et al. 2016. The model has allowed to calculate the probability of meeting a strong aggregation of krill over a period of 10 years. High krill aggregations are defined as the 95th percentile of predicted biomass in 10 x 10 km cells covering the Estuary and Gulf of St. Lawrence. Additional Information Plourde, S., Lehoux, C., McQuinn, I.H., and Lesage, V. (2016). Describing krill distribution in the western North Atlantic using statistical habitat models. DFO Can. Sci. Advis. Sec. Res. Doc. 2016/nnn. vi + xx p. Plourde, S., McQuinn, I.H., Lesage, V., Lehoux, C., Joly, P., Bourassa, M-N. in prep. Spatial distribution of krill in eastern Canadian waters: a climatological approach based on historical plankton net and acoustic data. The data are incomplete upstream of Pointe-des-Monts because of the lack of water height anomalies in the area (variable being used to predict aggregations of krill). A less number of years with a high aggregation of krill is thus represented but that should not be interpreted as a less favorable zone compared to areas East of Pointe-des-Monts.

Chlorophyll-a (mg/m2) time series at the 3 fixed stations and 46 stations, grouped into transects, of the Atlantic Zonal Monitoring Program (AZMP) under the Quebec region responsibility. The mean integrated chlorophyll-a data (0-100 m) of the last ten years are displayed as 2 layers, one for the June survey (2013-2022. 2020 not sampled), another for the autumn survey (2013-2022). A third layer shows the positions of the fixed stations of the program (Anticosti Gyre, Gaspé Current and Rimouski). Each station is linked with a .png file showing the chlorophyll-a time series and with a .csv file containing all the integrated chlorophyll-a data acquired at those stations since the beginning of the program sampling (columns : Station, Latitude, Longitude, Date(UTC), Sounding(m), Depth_min/Profondeur_min(m), Depth_max/Profondeur_max(m), Integrated_chlorophyll-a/Chlorophylle-a_intégrée(mg/m²)). Purpose The Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment. The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties. In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period. Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp. Supplemental Information Water sampling for chlorophyll-a analysis (Welschmeyer 1994 method) is done from Niskin bottles according to AZMP sampling protocol: Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

Bottom salinity time series at the 3 fixed stations and 46 stations, grouped into transects, of the Atlantic Zonal Monitoring Program (AZMP) under the Quebec region responsibility. The mean bottom salinity of the last ten years are displayed as 2 layers, one for the June survey (2014-2023, 2020 not sampled), another for the autumn survey (2014-2023). A third layer shows the positions of the fixed stations of the program (Anticosti Gyre, Gaspé Current and Rimouski). Each station is linked with a .png file showing the bottom salinity time series and with a .csv file containing all the bottom salinity data acquired at those stations since the beginning of the program sampling (columns : Station, Latitude, Longitude, Date(UTC), Sounding(m), Depth/Profondeur(m), Salinity/Salinité). Purpose The Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment. The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties. In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period. Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp. Supplemental Information The bottom salinity is determined from CTD profile in the water column according to AZMP sampling protocol: Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

This data report provides information on temperature and salinity in the Godbout region of the St. Lawrence Estuary. Sampling was carried out from 2019 to 2021 over an area of <5 km2. The databases provide information on temperature and salinity at an hourly rate for 2 years. The aim of this project is to analyze telemetry data from sea urchins (Strongylocentrotus droebachiensis), snow crabs (Chionoecetes opilio), rock crabs (Cancer irroratus), spider crabs (Hyas spp.) and whelks (Buccinum undatum). This report focuses on the presentation of benthic environmental data collected throughout the study with high spatial and temporal resolution. All reported variables were collected at the seafloor, as the aim of the project was to study the movement of epibenthic species. Temperature data were collected from three devices: telemetry receivers with integrated temperature sensors (InnovaseaTM), HoboTM and Star-OddiTM probes. Temperature data processing involved cleaning up extreme values (below 2°C and above 20°C) and homogenizing the data to fit the bathymetry matrix (1m x 1m cells) of the study site. Temperature data are provided in a NetCDF file with a matrix of the entire study site, where there is a stratum for each hour between August 2019 and October 2021 and in each file, a temperature value for each pixel of the raster. Salinity data were collected from Star-OddiTM probes only. Salinity values were averaged hourly for the entire study area. Salinity data is provided as a CSV file with one salinity value per hour for the entire study area.

Bottom dissolved oxygen time series at the 3 fixed stations and 46 stations, grouped into transects, of the Atlantic Zonal Monitoring Program (AZMP) under the Quebec region responsibility. The mean bottom dissolved oxygen of the last ten years are displayed as 2 layers, one for the June survey (2014-2023, 2020 not sampled), another for the autumn survey (2014-2023). A third layer shows the positions of the fixed stations of the program (Anticosti Gyre, Gaspé Current and Rimouski). Each station is linked with a .png file showing the bottom dissolved oxygen time series and with a .csv file containing all the bottom dissolved oxygen data acquired at those stations since the beginning of the program sampling (columns : Station, Latitude, Longitude, Date(UTC), Sounding(m), Depth/Profondeur(m), Dissolved_Oxygen/Oxygène_Dissous(%sat)). Purpose The Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment. The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties. In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period. Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp. Supplemental Information Bottom dissolved oxygen is determined from CTD profile in the water column according to AZMP sampling protocol: Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

Fisheries and Oceans Canada (DFO) conducts an annual multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1978. Over the years this survey has been conducted on four vessels: the MV Gadus Atlantica (1978-1994), the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005) and the CCGS Teleost (2004-2021). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. The specificities of the missions onboard the CCGS Alfred Needler are described below. Objectives: 1. Assess groundfish and northern shrimp population abundance and condition 2. Assess environmental conditions 3. Inventory species biodiversity 4. Monitor the pelagic ecosystem 5. Inventory marine mammals populations 6. Inventory seabirds populations 7. Collect samples for various research projects Survey description The survey covers the divisions 4R, 4S, 3Pn and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). This survey follows a stratified random sampling design and the fishing gear used on the CCGS Alfred Needler is a URI shrimp trawl (81'/114'). Standard trawling tows last 25 minutes, starting from the time the trawl touched the sea floor. Towing speed is 3 knots. Data For each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are then collected on a subsample. For fish, crab and squid, size and weight are gathered by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are collected for several species such as witch flounder, Atlantic cod, Greenland halibut and Atlantic halibut. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed. The catches per tow for fish taxa are available below. This data is also available via the 'Biodiversity' application on the St. Lawrence Global Observatory (SLGO). For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

Fisheries and Oceans Canada (DFO) conducts an annual multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1978. Over the years this survey has been conducted on cinq vessels: the MV Gadus Atlantica (1978-1994), the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2022) and the CCGS Cabot (2022-present). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. The specificities of the missions onboard the CCGS Teleost are described below. Objectives: 1. Assess groundfish and northern shrimp population abundance and condition 2. Assess environmental conditions 3. Inventory species biodiversity 4. Assess phytoplankton and mesozooplankton abundance 5. Monitor the pelagic ecosystem 6. Inventory marine mammals populations 7. Inventory seabirds populations 8. Collect samples for various research projects Survey description The survey covers the Estuary and the northern Gulf of St. Lawrence, that is the divisions 4R, 4S and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). Since 2008, coverage of division 4T has been increased in the upstream part of the Lower Estuary in order to sample the depths between 37 and 183 m. A stratified random sampling strategy is used for this survey and the area of the study area is 118,587 km². The fishing gear used on the CCGS Teleost is a four-sided Campelen 1800 shrimp trawl equipped with a Rockhopper footgear (“bicycle”). The trawl lengthening and codend are equipped with a 12.7-mm knotless nylon lining. Standard trawling tows last 15 minutes, starting from the time the trawl touches the sea floor. The aimed towing speed is 3 knots. Data For each fishing tow, the catch is sorted and weighed by taxa; individual are then count and biological data are then collected on a subsample. For fish, crab and squid, size and weight are gathered by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are sampled for several species such as Atlantic cod, Atlantic halibut, and witch flounder. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed. The catches per tow for fish taxa are available below. This data is also available via the 'Biodiversity' application on the St. Lawrence Global Observatory (SLGO). For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).