PURPOSE: Assess the distribution of freshwater mussels, including the Brook Floater (Alasmidonta varicosa), the Eastern Pearlshell (Margaritifera margaritifera), and the Yellow Lampmussel (Lampsilis cariosa) in New Brunswick. DESCRIPTION: This dataset contains the results of work undertaken from 2017 to 2024 to assess the distribution of freshwater mussels using environmental DNA (eDNA) surveys and species-specific qPCR assays. USE LIMITATION: To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

This shapefile dataset was designed using polygons extracted from the Cartography of Coastal Ecosystems of Maritime Quebec geodatabase (2022, Laboratory for Dynamics and Integrated Management of Coastal Zones, Fisheries and Oceans Canada), described in the paragraph below. It consists of polygons with eelgrass and incorporates attributes describing the vegetation cover, the composition of the seagrass beds, the associated ecosystem name, the imagery data that allowed photo-interpretation and the presence or absence of field data. A unique sequence number associated with each polygon makes it possible to trace the paired polygon of the geodatabase of coastal ecosystems to attribute values not detailed in this shapefile. The study area includes all of the estuarine and maritime coasts of Quebec, with the exception of certain sectors, including most of the Lower North Shore and Anticosti Island, with the exception of villages of Kegaska, la Romaine, Chevery, Blanc-Sablon and Port-Menier. Some islands off the estuary and gulf coasts are part of the region covered, such as Île d'Orléans, Isle-aux-Coudres, Île Verte and Île Bonaventure. The Mapping of Coastal Ecosystems of Maritime Quebec was carried out jointly by the Laboratory for Dynamics and Integrated Coastal Zone Management (LDGIZC) of the University of Quebec at Rimouski as part of the Coastal Resilience Project; and by the Fisheries and Oceans Canada team, as part of the Integrated Marine Response Planning Program (IMRP). A classification of coastal ecosystems was carried out on more than 4,200 km of coastal corridor, focusing on estuarine and maritime coasts of Quebec located between the limit of the upper foreshore and the shallow infralittoral (about 10m deep). The mapping method developed is based on semi-automated segmentation and a photo-interpretation of coastal ecosystems, using very high resolution multispectral photographs (RBVI) acquired between 2015 and 2020 by DFO. The classification of polygons is based on the assignment of predefined value classes for the biological and physical attributes under study (e.g., substrates, plant type, vegetation cover, geosystem, etc. ). Helicopter-born oblique photographs and field data helped to reduce the uncertainty associated with photo-interpretation. UQAR and DFO conducted field sampling campaigns targeting the mediolittoral (4,390 stations) and the lower mediolittoral and infralittoral zones (2,959 stations), respectively , which validated some of the attributes identified by photo-interpretation and provided detailed information on community structure . The geodatabase of the Mapping of coastal ecosystems is hosted and managed by UQAR on their SIGEC-Web cartographic platform: https://ldgizc.uqar.ca/Web/sigecweb Credits © DFO (2023, Fisheries and Oceans Canada) Provencher-Nolet, L., Paquette, L., Pitre, L.D., Grégoire, B. and Desjardins, C. 2024. Cartographie des macrophytes estuariens et marins du Québec. Rapp. Tech. Can. Sci. halieut. Aquat. 3617 : v + 99 p. Grégoire, B., Pitre, L.D., Provencher-Nolet, L., Paquette, L. and Desjardins, C. 2024. Distribution d’organismes marins de la zone côtière peu profonde du Québec recensés par imagerie sous-marine de 2017 à 2021. Rapp. tech. can. sci. halieut. aquat. 3616 : v + 78 p. Grégoire, B. 2022. Biodiversité du relevé côtier Planification pour une intervention environnementale intégrée dans l’estuaire et le golfe du Saint-Laurent (2017–2021). Observatoire global du Saint-Laurent. [Jeu de données] Jobin, A., Marquis, G., Provencher-Nolet, L., Gabaj Castrillo. M. J., Trubiano C., Drouet, M., Eustache-Létourneau, D., Drejza, S. Fraser, C. Marie, G. et P. Bernatchez (2021) Cartographie des écosystèmes côtiers du Québec maritime — Rapport méthodologique. Chaire de recherche en géoscience côtière, Laboratoire de dynamique et de gestion intégrée des zones côtières, Université du Québec à Rimouski. Rapport remis au ministère de l’Environnement et de la Lutte contre les changements climatiques, septembre 2021, 98 p.

This dataset was designed for Environment and Climate Change Canada's (ECCC) National Environmental Emergencies Center (NEEC) for oil spill preparedness and response. The polygons from this layer come from the coastal ecosystems geodatabase as part of the Mapping of coastal ecosystems of the Estuary and Gulf of St. Lawrence project. This layer represents semi-vegetated (25-75%) and vegetated (75-100%) zones of which marsh vegetation is the dominant. The study area includes all of the estuarine and maritime coasts of Quebec, with the exception of certain sectors, including most of the Lower North Shore and Anticosti Island, with the exception of villages of Kegaska, la Romaine, Chevery, Blanc-Sablon and Port-Menier. Some islands off the estuary and gulf coasts are part of the region covered, such as Île d'Orléans, Isle-aux-Coudres, Île Verte and Île Bonaventure. The mapping of coastal ecosystems was carried out jointly by the Laboratory for Dynamics and Integrated Coastal Zone Management (LDGIZC) of the University of Quebec at Rimouski as part of the Coastal Resilience Project (https: //ldgizc.uqar.ca/Web/projets/projet-resilience-cotiere) funded by the MELCC; and by the Fisheries and Oceans Canada team, as part of its Integrated marine response planning (IMRP) component of the Oceans Protection Plan (OPP), with the objective of updating the Marine Oil Spill Preparedness and Response Regime of Canada. The master geodatabase of coastal ecosystems is hosted and distributed by UQAR on their SIGEC-Web mapping platform: https://ldgizc.uqar.ca/Web/sigecweb The characterization of marshes was mainly carried out using photo-interpretation of RVBI aerial photos acquired by DFO (2015-2020) and oblique photos taken by helicopter acquired by UQAR in 2017. This dataset also includes the information from validation stations visited by UQAR (2018-2020), used to validate and refine the photo-interpretation.

This dataset was designed for Environment and Climate Change Canada's (ECCC) National Environmental Emergencies Center (NEEC) for oil spill preparedness and response. The polygons from this layer come mainly from the coastal ecosystems geodatabase as part of the Mapping of coastal ecosystems of the Estuary and Gulf of St. Lawrence project. This layer represents semi-vegetated and vegetated zones of which eelgrass is the dominant vegetation. The study area includes all of the estuarine and maritime coasts of Quebec, with the exception of certain sectors, including most of the Lower North Shore and Anticosti Island, with the exception of villages of Kegaska, la Romaine, Chevery, Blanc-Sablon and Port-Menier. Some islands off the estuary and gulf coasts are part of the region covered, such as Île d'Orléans, Isle-aux-Coudres, Île Verte and Île Bonaventure. The Mapping of coastal ecosystems of the Estuary and Gulf of St. Lawrence was carried out jointly by the Laboratory for Dynamics and Integrated Coastal Zone Management (LDGIZC) of the University of Quebec at Rimouski as part of the Coastal Resilience Project (https: //ldgizc.uqar.ca/Web/projets/projet-resilience-cotiere) funded by the MELCC; and by the Fisheries and Oceans Canada team, as part of its Integrated marine response planning (IMRP) component of the Oceans Protection Plan (OPP), with the objective of updating the Marine Oil Spill Preparedness and Response Regime of Canada. The master geodatabase of coastal ecosystems is hosted and distributed by UQAR on their SIGEC-Web mapping platform: https://ldgizc.uqar.ca/Web/sigecweb The characterization of eelgrass beds was mainly carried out using photo-interpretation of RVBI aerial photos acquired by DFO (2015-2020) and oblique photos taken by helicopter by UQAR in 2017. This dataset also includes the information from validation stations visited by UQAR (2018-2020). Data from sampling stations, carried out aboard small boats during DFO field campaigns (2017-2021), were also used to validate and refine the photo-interpretation. This dataset also includes eelgrass beds characterized in the Basse-Côte-Nord (MRC Le Golfe-de-Saint-Laurent) by the Agence Mamu Innu Kaikusseht (AMIK) as part of the project ''Involvement of Innu communities in the protection of species at risk and their habitats 2010-2011''. These data were produced during aerial overflights at low altitude (200m and 400m) of the foreshore, as 2 observers circumscribed and documented the covering of eelgrass beds. Credits © UQAR-MPO-AMIK (2023, Laboratoire de dynamique et de gestion intégrée des zones côtières, Pêches et Océans Canada, Agence Mamu Innu Kaikusseht) Provencher-Nolet, L., Paquette, L., Pitre, L.D., Grégoire, B. and Desjardins, C. 2024. Cartographie des macrophytes estuariens et marins du Québec. Rapp. Tech. Can. Sci. halieut. Aquat. 3617 : v + 99 p. Grégoire, B., Pitre, L.D., Provencher-Nolet, L., Paquette, L. and Desjardins, C. 2024. Distribution d’organismes marins de la zone côtière peu profonde du Québec recensés par imagerie sous-marine de 2017 à 2021. Rapp. tech. can. sci. halieut. aquat. 3616 : v + 78 p. Grégoire, B. 2022. Biodiversité du relevé côtier Planification pour une intervention environnementale intégrée dans l’estuaire et le golfe du Saint-Laurent (2017–2021). Observatoire global du Saint-Laurent. [Jeu de données] Nadeau, V., Le Breton, S. 2011. Inventaire aérien des herbiers de zostère de la Basse-Côte-Nord du Golfe du Saint-Laurent. Agence Mamu Innu Kaikusseht. 25 p. Jobin, A., Marquis, G., Provencher-Nolet, L., Gabaj Castrillo. M. J., Trubiano C., Drouet, M., Eustache-Létourneau, D., Drejza, S. Fraser, C. Marie, G. et P. Bernatchez (2021) Cartographie des écosystèmes côtiers du Québec maritime — Rapport méthodologique. Chaire de recherche en géoscience côtière, Laboratoire de dynamique et de gestion intégrée des zones côtières, Université du Québec à Rimouski. Rapport remis au ministère de l’Environnement et de la Lutte contre les changements climatiques, septembre 2021, 98 p.

PURPOSE: Understanding and predicting species range shifts is crucial for conservation amid global warming. This study analyzes life-history traits of four seal species (ringed (Pusa hispida Schreber, 1775), bearded (Erignathus barbatus Pallas, 1811), harp (Pagophilus groenlandicus Erxleben, 1777), and harbour (Phoca vitulina Linnaeus, 1758) seals) in the Canadian Arctic using data from Inuit subsistence harvests. Bearded seals are largest, followed by harp seals, harbour seals, and ringed seals. Seasonal blubber depth patterns show minimal variation in bearded seals, whereas harbour and ringed seals accumulate fat in open-water seasons and use it during ice-covered seasons. Endemic Arctic seals (ringed and bearded) exhibit greater longevity and determinate body growth, reaching maximum size by 5 years, while harbour and harp seals grow indeterminately, physically maturing around 10-15 years. Age of maturation varies, with ringed and harbour seals being more sensitive to environmental fluctuations. Most bearded seals reproduce successfully each year, while ringed seals exhibit more variability in their annual reproductive success. Analysis of isoprenoid lipids in liver tissue indicates that ringed and bearded seals rely on ice-algal production, whereas harp and harbour seals depend on open-water phytoplankton production. Bearded seals appear more specialized and potentially face less competition, while harp seals may adapt better to changing habitats. Despite expected range shifts to higher latitudes, all species exhibit tradeoffs, complicating predictions for the evolving Arctic environment. DESCRIPTION: This dataset contains the data reported in Steven H. Ferguson, Jeff W. Higdon, Brent G. Young, Stephen D. Petersen, Cody G. Carlyle, Ellen V. Lea, Caroline C. Sauvé, Doreen Kohlbach, Aaron T. Fisk, Gregory W. Thiemann, Katie R. N. Florko, Derek C. G. Muir, Charmain D. Hamilton, Magali Houde, Enooyaq Sudlovenick, and David J. Yurkowski. 2024. A comparative analysis of life-history features and adaptive strategies of Arctic and subarctic seal species - who will win the climate change challenge? Canadian Journal of Zoology 2024-0093.R1 The data set includes species, location, harvest date, sex, age, standard length, girth, fat depth, teste size, parity status, pregnancy status, corpora lutea (n), corpus albicans (n), follicles (n). This dataset includes raw, unfiltered, and unprocessed historical data provided by harvesters that have not been screened for outliers. Individual users should screen the data for their specific use. Cite these data as: Steven H. Ferguson, Jeff W. Higdon, Brent G. Young, Stephen D. Petersen, Cody G. Carlyle, Ellen V. Lea, Caroline C. Sauvé, Doreen Kohlbach, Aaron T. Fisk, Gregory W. Thiemann, Katie R. N. Florko, Derek C. G. Muir, Charmain D. Hamilton, Magali Houde, Enooyaq Sudlovenick, and David J. Yurkowski. 2024. Arctic and Aquatic Research Division, Fisheries and Oceans Canada, Winnipeg, MB. https://open.canada.ca/data/en/dataset/ea9ff038-8b16-11ef-8cce-55cc7f028297

A research survey on the common whelk (Buccinum undatum) has been conducted biennially in three sectors of the St. Lawrence Estuary since 2005 to assess the abundance of whelk and benthic species associated with whelk habitat. Only data for benthic species associated with whelk habitat are presented in this dataset. The survey was initiated in 2005 following the intensive fishery of the early 2000s in the Upper North Shore region. The three sectors covered by the survey were based on the distribution of commercial fishing effort from 2001 to 2004. Surveys were conducted between mid-July and early August from 2005 to 2019 on the North Shore of the St. Lawrence Estuary between Portneuf-sur-Mer and Baie-Comeau according to a fixed station sampling design. Three sectors were surveyed at each survey: Forestville (69°03'11"W-48°39'24"N and 68°56'02"W-48°46'16"N), Pointe-aux-Outardes (68°35'53"W-48°59'32"N and 68°25'30"W-49°01'06"N) and Baie-Comeau (68°06'04"W-49°08'40"N and 68°05'10"W-49°12'26"N). Since 2007, the sampling plan consists of 55 stations in Forestville, 26 stations in Pointe-aux-Outardes and 11 stations in Baie-Comeau. The targeted depth interval at the three sectors was approximately 5 to 40 m. Specimens were collected using a Digby-type scallop dredge with a total width of 3.04 m consisting of four 19 mm mesh Vexar™ lined baskets to harvest small individuals. Start and end positions were recorded to calculate the distance traveled at each tow using the geosphere library in R. Since 2011, the average tow distance was approximately 300 m. The area covered at each tow was the product of the dredge width and distance. The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "additional_information_event_and_occurrence" file includes sample size, sampling protocol and sampling effort, among others. The "taxon_occurrence" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Virginie Roy (virginie.roy@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. Special cases were noted in "identificationRemarks" and selected specimens were confirmed using field photos. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.

The North Shore of the Lower Estuary (Upper North Shore, Quebec) is a productive coastal system where many commercial species of benthic invertebrates are fished in the infralittoral (10-20 m) and circalittoral (20-50 m) zone. However, little data exist on the biodiversity of non-commercial species and the environmental characteristics of the benthic habitat in this area. Two scientific surveys were conducted in 2018 and 2019 to address this knowledge gap by developing a framework of biodiversity and environmental (water column and seafloor) data taking that will be used to determine the baseline state of the benthic ecosystem in this region. Surveys were conducted in 2018 (August 11-14) and 2019 (July 30-August 5) in the Upper North Shore region (between the towns of Forestville and Godbout). Surveys followed a fixed sampling design of eight transects perpendicular to bathymetry with stations at 10 m depth intervals in a bathymetry range of 10-50 m for a total of approximately 40 stations per survey. Specimens were collected with a beam trawl with an opening of 2.8 m. The hauls were made at a target speed of 2 knots and a target duration of 7 minutes. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library of R. The average tow distance was approximately 425 m. The area covered at each tow was the product of the trawl opening and the distance traveled. The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "additional_information_event_and_occurrence" file includes sample size, sampling protocol and sampling effort, among others. The "taxon_occurrence" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Virginie Roy (virginie.roy@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. Special cases were noted in "identificationRemarks" and selected specimens were confirmed using field photos. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated. This project was funded by DFO Coastal Environmental Baseline Program under Canada’s Oceans Protection Plan. This initiative aims to acquire environmental baseline data contributing to the characterization of important coastal areas and to support evidence-based assessments and management decisions for preserving marine ecosystems.

A research survey on Stimpson's surfclam (Mactromeris polynyma) was conducted from June 15 to June 26 2017 in the Estuary of the St. Lawrence River on the Forestville deposit (Fishing Area 1A). The primary objective of this survey was to investigate the spatial distribution of pre-commercial (< 80 mm) and commercial (≥ 80 mm) sizes of Stimpson's surfclams as well as to assess the abundance and diversity of benthic species associated with the sandy habitat of the Stimpson's surfclam. Only benthic species data associated with Stimpson's surfclam habitat are presented in this dataset. Data were collected according to a systematic sampling design consisting of 77 stations, between 7 and 45 m depth. Stations were spaced 200 m apart and dispersed along a total of 18 transects perpendicular to the bathymetry. Transects were parallel and spaced 500 m apart. Specimens were collected using a hydraulic dredge of the "New England" type with a total length of 2.29 meters and a total width of 1.68 meters, of which 1.35 meters was knife width. The dredge was lined with a 19 millimeter mesh Vexar™ to harvest small individuals. The hauls were made at a speed of 0.2-0.3 knots for a duration of 2 to 3 minutes. Start and end positions were recorded to calculate the distance traveled at each tow using the geosphere library in R. The average tow distance was approximately 25 m. The area covered at each stroke was the product of the width of the dredge blade and the distance. The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "additional_information_event_and_occurrence" file includes sample size, sampling protocol and sampling effort, among others. The "taxon_occurrence" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Virginie Roy (virginie.roy@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. Special cases were noted in "identificationRemarks" and selected specimens were confirmed using field photos. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.

The purpose of this study was to characterize the kelp bed at Batture-aux-Alouettes, a preferred food source for the green sea urchin (Strongylocentrotus droebachiensis). The green urchin is fished commercially in Quebec and the fishing effort is concentrated on the Batture-aux-Alouettes near Tadoussac, at the mouth of the Saguenay Fjord. The study was conducted in two separate phases in 2018 and 2019. The main objective of this study was to determine the abundance and biomass of the kelp bed at Batture-aux-Alouettes. The first phase, using a stratified random sampling design, was conducted from August 21th to August 24th, 2018. Sampling of two 50 x 50 cm quadrats, separated by a distance of approximately 30 m, was conducted at eleven sites during twelve dives in the eastern section of the Batture-aux-Alouettes to collect kelp for biomass estimation and macroalgal species richness assessment. In the second phase, a total of 429 stations were first sampled between July 15 and 18, 2019 with a camera system dropped in two 50 x 50 cm quadrats. The presence or absence of kelp, percent macroalgal cover, and substrate type were assessed for each photo. As a result of this underwater photographic analysis, 129 of these stations were identified as having a presence of kelp and 88 of these stations had a presence of other algal species. To ensure equal representation of the different depth strata, the stations with kelp were divided into three depth categories: shallow (-1.7 m to 0 m), medium (0 m to 2 m) and deep (2 m to 5 m). Dives were conducted from August 13 to 15, 2019, at ten of these stations using a stratified random sampling design, taking care to ensure a balanced spatial distribution as well as an equal distribution of the different depth strata (four in the shallow, three in the medium, and two in the deep). Sampling of the 50 x 50 cm dive quadrat took place at three different distances spaced 5 m apart from a transect, i.e. at the 3 m (_3m), 8 m (_8m) and 13 m (_13m) mark. If there was little or no kelp in the quadrat, the quadrat sampling could be repeated for up to four quadrats per distance for a total area of 1 m². Two additional quadrats were conducted (_x) at two stations. Biomass assessment was also done via "cookie cutter" sampling (_CC). Divers took the same 50 x 50 cm quadrat and placed it on a selected (i.e., non-random) plot with 100% kelp cover. The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic information about the event, such as date and location. The "additional_information_event_and_occurrence" file includes sample size, protocol and sampling effort. The "taxon_occurrence" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. To obtain the abundance and biomass assessment of the kelp bed at Batture-aux-Alouettes, contact Rénald Belley (renald.belley@dfo-mpo.gc.ca). For quality control, the organisms were identified in the field fallowing the guide: Chabot, Robert et Anne Rossignol. 2003. Algues et faune du littoral du Saint-Laurent maritime : Guide d'identification. Institut des Sciences de la mer de Rimouski, Rimouski; Pêches et Océans Canada (Institut Maurice-Lamontagne), Mont-Joli. 113 pages. The taxonomy was checked against the World Register of Marine Species (WoRMS) to match recognized standards and using the R obistools and worrms libraries. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. All sample locations were spatially validated. This project was funded by DFO Coastal Environmental Baseline Program under Canada’s Oceans Protection Plan. This initiative aims to acquire environmental baseline data contributing to the characterization of important coastal areas and to support evidence-based assessments and management decisions for preserving marine ecosystems.

This record contains two datasets: 1. Raw unfiltered geographic coordinates and accuracy estimates of ringed seals tagged in the Western Canadian Arctic and 2. The location estimate from state-space models using a 12-hr time step. In total, 17 ringed seals were captured, measured, weighed, and tagged with satellite-linked transmitters (SDR-10, SDR-16, SPLASH) in June and July of 1999, 2000, and 2010. The tags, manufactured by Wildlife Computers Ltd. (Redmond, Washington, USA), sent data to polar orbiting satellites. Data were then retrieved via the Argos system (Harris et al., 1990). Tags collected and relayed information on movement (geographic positions) and diving data of the instrumented animals.