Fisheries and Oceans Canada (DFO) conducts an annual summer multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1984. Over the years this survey has been conducted on four vessels: the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2022) and the CCGS Cabot (2022-current). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. However, comparative analyses have been carried out between vessels, and conversion factors are available upon request for a number of species. The specificities of the missions onboard the CCGS Cabot are described below. Objectives: 1. Assess groundfish and northern shrimp population abundance and condition 2. Assess environmental conditions 3. Conduct a biodiversity inventory of benthic and demersal megafauna 4. Assess phytoplankton and mesozooplankton abundance 5. Monitor the pelagic ecosystem 6. Collect samples for various research projects Survey description The survey covers the Estuary and the northern Gulf of St. Lawrence, that is the divisions 4R, 4S and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). Since 2008, coverage of division 4T has been increased in the upstream part of the Lower Estuary. Approximately 200 sampling stations are randomly attributed in depth-based strata, ranging from around 40 m near the shores to close to 500 m in the deep channels. The fishing gear used on the CCGS Cabot is a four-sided modified Campelen 1800 shrimp trawl equipped with a Rockhopper footgear (“bicycle”). The trawl lengthening and codend are equipped with a 12.7-mm knotless nylon lining. Standard trawling tows last 15 minutes, starting from the time the trawl touches the sea floor. The aimed towing speed is 3 knots. Data For each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are sampled for several species such as Atlantic cod, Atlantic halibut, Greenland halibut and witch flounder. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed. The biological data are divided into 4 files: a “Metadata” file containing set information, a “Catches” file containing catches per set for fish taxa, a “Carbio” file containing biological and morphometric measurements per individual and a “Shrimps” file containing information on shrimp catches. The latest published data is preliminary and will be updated at the end of January of the following year. It's important to note that this is raw data. Only sets considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

Each summer, environmental community groups collect important data to determine if groupings of fish, shrimp and crab – what is called a community- can be used as an indicator of the health status of bays and estuaries. Sampling was conducted from May through September for the first years then from June through August. In 2018 and 2019, the sampling was conducted just once in each estuary. Community group members and staff sample six stations once a month in their designated estuary. Fish, shrimps and crabs are collected with a beach seine net and later released live back to the water once identified and counted. From this, the community groups provide important information to Fisheries and Oceans Canada, including: - identification and numbers of fish, shrimp and crab species; - water conditions and samples; - information on aquatic plants; - sediment samples. With this information, Fisheries and Oceans Canada scientists working with government agencies and universities can conduct analyses to determine the suitability of indicators to assess the health of bays and estuaries. PARAMETERS COLLECTED: Parameters: abundance, species richness, species developmental stage (young-of-the-year or adult), water temperature, water salinity, water dissolved oxygen, dissolved inorganic nutrient (nitrate, nitrite, phosphate), sediment % organic content, sediment % humidity content and sediment mean grain size, % submerged aquatic vegetation cover NOTES ON QUALITY CONTROL: Data entry into Excel and first quality control verification is done by CAMP summer students. A second quality control verification is done by DFO staff. See publ # 2823 attached to this record. In 2018, the historical data was migrated into a relationship database. From this year on, annual data will be entered into the database using a custom application. The application front end has numerous QC elements built-in. SAMPLING METHODS: Please see the following URL for sampling details: http://www.dfo-mpo.gc.ca/Library/319437.pdf

PURPOSE: Establishing efficient, non-destructive sampling methods for clam population assessments. DESCRIPTION: In the Gulf of St. Lawrence (GSL) Management Region, clam assessments are uncommon due to limited resources and the labour-intensive nature of sampling clam beds. Furthermore, clam assessments typically rely on destructive sampling that disturbs sediment and removes animals from their habitat. Establishing efficient, non-destructive sampling methods for clam population assessments can reduce the impact of scientific sampling on these habitats and provide for more efficient monitoring. In this study, we tested the idea that visually observing siphon holes on the sediment surface could predict the presence, number, and size of soft-shell clams across different sites in the southern GSL. Siphon holes reasonably predicted the presence, number, and size/biomass of soft-shell clams in most, but not all, sites. Thus, in many habitats in the GSL, siphon holes can be used for population assessments, providing a powerful tool to enhance Science advice to fisheries managers. Data was collected at the following sites: * Maisonnette, Parc Maisonnette, Maisonnette, New Brunswick, Canada * Kouchibouguac, Loggiecroft wharf, Kouchibouguac National Park, New Brunswick, Canada * Shemogue, Amos Point Road, Little Shemogue, New Brunswick, Canada * Powell's Cove, Powell's Point Provincial Park, Little Harbour, Nova Scotia, Canada PARAMETERS COLLECTED: - Clam abundance - Clam biomass (total sample) - Clam size (length, weight) - Siphon hole abundance - Siphon hole size - Siphon hole characterization (i.e., identification of actual clam based on shape) - Seawater temperature - Sediment grain size - Sediment organic content (%) - Sediment relative moisture content (%) NOTES ON QUALITY CONTROL: Original data entry by Jillian Hunt and/or Isabelle Brennan. Data checked and validated prior to analysis by Jeff Clements. Data further checked and validated prior to publication by Amélie Robichaud. PHYSICAL SAMPLE DETAILS: No physical samples retained. - Clam samples returned back to original habitat after measuring and weighing in the field. - Sediment core samples stored in walk-in freezer and discarded after processing and analysis. SAMPLING METHODS: i. Identifying, counting, weighing, and measuring (with calipers) clams ii. Identifying, counting, and measuring (with calipers) clam siphon holes iii. Seawater temperature monitoring via data loggers iv. Sediment grain size, organic content, and moisture content analysis USE LIMITATION: To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Summary The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities. Data This dataset on the redfish (Sebastes sp.) includes the metadata, sample weight, fish length, the sex and the number of specimens measured. This dataset covers the periods of 1980-1996, 1999-2013, 2015-2016 and 2019. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Summary The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities. Data This dataset on the snow crab (Chionoecetes opilio) includes the metadata, sample weight, specimen weight, shell width and condition, sex and the right claw height of the specimens measured. This dataset covers the periods of 1984-2003 and 2005 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Summary The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities. Data This dataset on the winter flounder (Pseudopleuronectes americanus) includes the metadata, sample weight, fish length, the sex and the number of specimens measured. This dataset covers the periods of 1992, 1997-2019. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

A research survey on American lobster (Homarus americanus) has been conducted annually in the Magdalen Islands since 1995 to assess the abundance and structure of lobster populations in this area. Starting in 2007, the main objective was modified to include the diversity and abundance of benthic species associated with lobster habitat. Only benthic species data associated with lobster habitat are presented in this dataset. Surveys were generally conducted during the first two weeks of September from 2007 to 2020 on the entire south side of the Magdalen Islands, from Grosse-Île to Havre-Aubert. The sampling plan consists of 70 trawl tows on 50 fixed stations, between 4 and 35 meters in depth. Some stations had double tows. Specimens were collected using a Nephrops-type door trawl with a total width of 3.04 meters consisting of four Vexar™ lined baskets of 19 millimeter mesh size in order to harvest small individuals. Start and end positions were recorded to calculate the distance traveled at each tow using the geosphere library in R. The year 2011 is not included in the dataset, as biodiversity data were not recorded. Since 2017, the average tow distance has been reduced from 1000 meters to 500 meters. The opening of the trawl is also noted every minute throughout the duration of the tow so that the area sampled can be calculated. The area covered in each tow was the product of the trawl opening and the distance traveled. The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "Event_data" file includes generic activity information, including date and location. The "Occurrence" file includes the taxonomy of the observed species, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Benoît Bruneau (Benoit.Bruneau@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "ScientificnameID" field of the occurrence file. Special cases were noted in the "identificationRemarks" field and selected specimens were confirmed with field photos mentioned in "associatedMedia". Data quality checks were performed using the R obistools and WORMS libraries. All sampling locations were spatially validated.

This dataset provides projected 30-year, 50-year, and 100-year return levels for harbours in British Columbia by 2050 and 2100 under an intermediate emission scenario SSP245, relative to the mean sea level over 1993-2020. The return levels are a combination of estimated present extreme sea levels and projected mean sea level rise. The present extreme sea levels are derived from hourly coastal sea levels for the period from 1993 to 2020, simulated using a high-resolution Northeast Pacific Ocean Model (NEPOM). The projected mean sea level rise is derived from the regional mean sea level rise data of the IPCC 6th Assessment Report under SSP245, adjusted for the local vertical land motion.

A research survey on snow crab (Chionoecetes opilio) was conducted from July 7 to July 26, 2019 in the Estuary St. Lawrence River between Forestville, Baie-Comeau and Matane. The main objective of this survey was to assess the abundance of snow crab and benthic species associated with snow crab habitat. Only data for benthic species associated with snow crab habitat are presented in this dataset. Data were collected according to a fixed station sampling design consisting of 66 stations, between 31 and 279 meters depth. Specimens were collected using a beam trawl with a total width of 2.8 meters and a total height of 0.76 meters. The codend was lined with a 16 millimeter stretched mesh net in order to harvest the small individuals. The hauls were made at a target speed of 2 knots and a target duration of 15 minutes. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library in R. The average tow distance was approximately 25 m. The area covered at each tow was the product of the trawl opening and the distance traveled. The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "Activity_Information" file includes generic activity information, including date and location. The "occurrence_taxon" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. To obtain the abundance and biomass assessment, contact Cedric Juillet (cedric.juillet@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "ScientificnameID" field of the occurrence file. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.