PURPOSE: Establishing efficient, non-destructive sampling methods for clam population assessments. DESCRIPTION: In the Gulf of St. Lawrence (GSL) Management Region, clam assessments are uncommon due to limited resources and the labour-intensive nature of sampling clam beds. Furthermore, clam assessments typically rely on destructive sampling that disturbs sediment and removes animals from their habitat. Establishing efficient, non-destructive sampling methods for clam population assessments can reduce the impact of scientific sampling on these habitats and provide for more efficient monitoring. In this study, we tested the idea that visually observing siphon holes on the sediment surface could predict the presence, number, and size of soft-shell clams across different sites in the southern GSL. Siphon holes reasonably predicted the presence, number, and size/biomass of soft-shell clams in most, but not all, sites. Thus, in many habitats in the GSL, siphon holes can be used for population assessments, providing a powerful tool to enhance Science advice to fisheries managers. Data was collected at the following sites: * Maisonnette, Parc Maisonnette, Maisonnette, New Brunswick, Canada * Kouchibouguac, Loggiecroft wharf, Kouchibouguac National Park, New Brunswick, Canada * Shemogue, Amos Point Road, Little Shemogue, New Brunswick, Canada * Powell's Cove, Powell's Point Provincial Park, Little Harbour, Nova Scotia, Canada PARAMETERS COLLECTED: - Clam abundance - Clam biomass (total sample) - Clam size (length, weight) - Siphon hole abundance - Siphon hole size - Siphon hole characterization (i.e., identification of actual clam based on shape) - Seawater temperature - Sediment grain size - Sediment organic content (%) - Sediment relative moisture content (%) NOTES ON QUALITY CONTROL: Original data entry by Jillian Hunt and/or Isabelle Brennan. Data checked and validated prior to analysis by Jeff Clements. Data further checked and validated prior to publication by Amélie Robichaud. PHYSICAL SAMPLE DETAILS: No physical samples retained. - Clam samples returned back to original habitat after measuring and weighing in the field. - Sediment core samples stored in walk-in freezer and discarded after processing and analysis. SAMPLING METHODS: i. Identifying, counting, weighing, and measuring (with calipers) clams ii. Identifying, counting, and measuring (with calipers) clam siphon holes iii. Seawater temperature monitoring via data loggers iv. Sediment grain size, organic content, and moisture content analysis USE LIMITATION: To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

The North Shore of the Lower Estuary (Upper North Shore, Quebec) is a productive coastal system where many commercial species of benthic invertebrates are fished in the infralittoral (10-20 m) and circalittoral (20-50 m) zone. However, little data exist on the biodiversity of non-commercial species and the environmental characteristics of the benthic habitat in this area. Two scientific surveys were conducted in 2018 and 2019 to address this knowledge gap by developing a framework of biodiversity and environmental (water column and seafloor) data taking that will be used to determine the baseline state of the benthic ecosystem in this region. Surveys were conducted in 2018 (August 11-14) and 2019 (July 30-August 5) in the Upper North Shore region (between the towns of Forestville and Godbout). Surveys followed a fixed sampling design of eight transects perpendicular to bathymetry with stations at 10 m depth intervals in a bathymetry range of 10-50 m for a total of approximately 40 stations per survey. Specimens were collected with a beam trawl with an opening of 2.8 m. The hauls were made at a target speed of 2 knots and a target duration of 7 minutes. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library of R. The average tow distance was approximately 425 m. The area covered at each tow was the product of the trawl opening and the distance traveled. The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "additional_information_event_and_occurrence" file includes sample size, sampling protocol and sampling effort, among others. The "taxon_occurrence" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Virginie Roy (virginie.roy@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. Special cases were noted in "identificationRemarks" and selected specimens were confirmed using field photos. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated. This project was funded by DFO Coastal Environmental Baseline Program under Canada’s Oceans Protection Plan. This initiative aims to acquire environmental baseline data contributing to the characterization of important coastal areas and to support evidence-based assessments and management decisions for preserving marine ecosystems.

Fisheries and Oceans Canada (DFO) conducts an annual summer multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1984. Over the years this survey has been conducted on four vessels: the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005), the CCGS Teleost (2004-2021) and the CCGS Cabot (2022-current). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. The specificities of the missions onboard the CCGS Alfred Needler are described below. Objectives: 1. Assess groundfish and northern shrimp population abundance and condition 2. Assess environmental conditions 3. Conduct a biodiversity inventory of benthic and demersal megafauna 4. Monitor the pelagic ecosystem 5. Collect samples for various research projects Survey description The survey covers the divisions 4R, 4S, 3Pn and the northern part of division 4T of the Northwest Atlantic Fisheries Organization (NAFO). This survey follows a stratified random sampling design and the fishing gear used on the CCGS Alfred Needler is a URI shrimp trawl (81'/114'). Standard trawling tows last 25 minutes, starting from the time the trawl touched the sea floor. Towing speed is 3 knots. Data For each fishing tow, the catch is sorted and weighed by taxa; individuals are then counted and biological data are collected on a subsample. For fish, crab and squid, size and weight are measured by individual and, for some species, sex, gonad maturity, and the weight of certain organs (stomach, liver, gonads) are also evaluated. The soft rays of the anal fin are counted for redfish, and the otoliths are collected for several species such as witch flounder, Atlantic cod, Greenland halibut and Atlantic halibut. A roughly 2-kg shrimp sample is sorted and weighed by species (and by stage of maturity for northern shrimp). The shrimps are measured individually. The other invertebrates are counted (no individual measurements) and photographed. The biological data are divided into 5 files: a “Metadata” file containing set information, a “Catches” file containing catches per set for fish taxa, a “Carbio” file containing biological and morphometric measurements per individual, a “Freql” file containing the length frequency of fish and a “Shrimps” file containing information on shrimp catches. It's important to note that this is raw data. Only sets considered successful are retained. In each set, all species are kept, with a few exceptions. For more information please contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca).

These data sets provide information pertaining to shrimp and bycatch estimates associated with otter-trawling and trapping (November, 2000) and beam-trawling (February, 2001) in Simoom Sound. Data sets were compiled and formatted by Meagan Mak. Abstract from report: As part of a project investigating possible modification of marine ecosystems by shrimp trawling and trapping, we obtained information on catches offish, shrimp, prawns , and bycatch organisms as well as weight, sex ratios , egg location and colIateral damage to several species of pandalids and eualids. Focusing on the humpback shrimp (Pandalus hypsinotus), we assessed damage to the rostrum, carapace, abdomen, and tail fan on specimens caught by beam trawling, otter trawling, and trapping. Data are given from a preliminary study conducted in Northumberland Channel in June 2000 and more comprehensive sampling from Simoom Sound in November 2000 and February 2001.

A research survey on American lobster (Homarus americanus) has been conducted annually in the Magdalen Islands since 1995 to assess the abundance and structure of lobster populations in this area. Starting in 2007, the main objective was modified to include the diversity and abundance of benthic species associated with lobster habitat. Only benthic species data associated with lobster habitat are presented in this dataset. Surveys were generally conducted during the first two weeks of September from 2007 to 2020 on the entire south side of the Magdalen Islands, from Grosse-Île to Havre-Aubert. The sampling plan consists of 70 trawl tows on 50 fixed stations, between 4 and 35 meters in depth. Some stations had double tows. Specimens were collected using a Nephrops-type door trawl with a total width of 3.04 meters consisting of four Vexar™ lined baskets of 19 millimeter mesh size in order to harvest small individuals. Start and end positions were recorded to calculate the distance traveled at each tow using the geosphere library in R. The year 2011 is not included in the dataset, as biodiversity data were not recorded. Since 2017, the average tow distance has been reduced from 1000 meters to 500 meters. The opening of the trawl is also noted every minute throughout the duration of the tow so that the area sampled can be calculated. The area covered in each tow was the product of the trawl opening and the distance traveled. The two files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "Event_data" file includes generic activity information, including date and location. The "Occurrence" file includes the taxonomy of the observed species, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Benoît Bruneau (Benoit.Bruneau@dfo-mpo.gc.ca). For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "ScientificnameID" field of the occurrence file. Special cases were noted in the "identificationRemarks" field and selected specimens were confirmed with field photos mentioned in "associatedMedia". Data quality checks were performed using the R obistools and WORMS libraries. All sampling locations were spatially validated.

The Canadian Environmental Sustainability Indicators (CESI) program provides data and information to track Canada's performance on key environmental sustainability issues. These indicators track facility-based releases to water of 3 substances that are defined as toxic under the Canadian Environmental Protection Act, 1999: mercury, lead and cadmium and their compounds. For each substance, data are provided at the national, regional (provincial and territorial) and facility level, as well as by source. The indicators inform Canadians about releases to water of these 3 substances from facilities in Canada. The Releases of harmful substances to water indicators also help the government to identify priorities and develop or revise strategies to inform further risk management and to track progress on policies put in place to reduce or control these 3 substances and water pollution in general. Information is provided to Canadians in a number of formats including: static and interactive maps, charts and graphs, HTML and CSV data tables and downloadable reports. See the supplementary documentation for the data sources and details on how the data were collected and how the indicator was calculated. Canadian Environmental Sustainability Indicators: https://www.canada.ca/environmental-indicators

This dataset contains annual mean stream water flow/discharge data derived from daily means for headwater streams draining forested hillslopes measured at stream catchments C31, C32, C33, C34, C35, C37, C38, C39, C42, C46, C47, C49, and C50 in the Turkey Lakes Watershed, approximately 60 km northwest of Sault Ste. Marie, Ontario, Canada. This data set is recorded as annual mean flow by calendar year (January-December in litres per second), annual mean flow by water year (October to September in litres per second), and annual number of zero flow days by water year. Daily mean flows that were used to derive this data set were recorded from 1981-2012 by the Great Lakes Forestry Centre, and are reported for 1981-2011 due to some inaccuracies throughout the 2012 data. Hydrological gauging stations employ "flow-control" 120 degree V-notch weirs (catchments 31, 33, 34, 37, 39, 42, 46, and 47), 90 degree V-notch weirs (catchments 32, 35, and 49), and 60 degrees V-notch weirs (catchment 38) to facilitate monitoring of stream discharge. Water "stage" or depth within the structure (e.g. in the pool behind the weir notch) is automatically and continuously recorded by chart recorders (Leupold & Stevens A-71 SE Water Level Recorder) from 1981-2003. Capacitance rods (Trutrack WT-HR 1000) installed in stilling wells replaced the chart recorders over the period of 2002 to 2003 and were used until 2012. The capacitance rods logged data at 1 hour intervals for the majority of their use and then averaged to a daily rate. Manual stage measurements have been taken intermittently when synoptic water chemistry samples were taken throughout the years. Stage data are then converted to a continuous record of flow using the relationship between stage and discharge measurements.

PURPOSE: The objective of the program is to gather environmental coastal data to better understand fluctuations in water temperature and its effect on coastal marine species. DESCRIPTION: Bottom and surface water temperatures are monitored in coastal waters of the southern Gulf of St. Lawrence using electronic recording devices attached to navigational buoys or moorings and set to record every two hours. PARAMETERS COLLECTED: temperature (environmental); point (spatial) NOTES ON QUALITY CONTROL: Data are checked for irregularities. SAMPLING METHODS: Temperature recording devices are installed by fishermen, DFO staff and, since 2000, by the Canadian Coast Guard staff. USE LIMITATION: To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Water level and discharge data are available from Water Survey of Canada’s Hydrometric Network. The Water Survey of Canada (WSC) is the national authority responsible for the collection, interpretation and dissemination of standardized water resource data and information in Canada. In partnership with the provinces, territories and other agencies, WSC operates over 2500 active hydrometric gauges across the country, maintains an archive of historical information for over 7600 stations and provides access to near real-time (water level and stream flow) provisional data at over 1700 locations in Canada.

To better understand patterns of temporal and spatial variation of fish assemblages in offshore waters of Lake Winnipeg (Manitoba, Canada), pelagic trawl tows were conducted at lakewide monitoring stations since 2002. Trawl samples collected during spring, summer, and fall from the south basin, channel, and north basin were used to study effects of season and geographic region within the lake on species biomass estimates.