These datasets provide information pertaining to sediment grain size, porosity, organic content, total carbon and nitrogen concentrations, trace element concentrations, chlorophyll and phaeopigment concentrations, and meiofauna and macrofaunal abundance in Simoom Sound between November, 2000, and February, 2001. Data formatting of files were performed by Meagan Mak. Sutherland et al (2023) covers the benthic component of a broader project investigating potential modification of marine ecosystems by shrimp trawling and trapping on the central coast of British Columbia. Sediment and infaunal samples were collected before and after fishing with commercial fishing gear consisting of otter-trawl, beam-trawl, and trap-lines. Simoom Sound was sampled in November 2000 and February 2001. Tabulated data of sediment characteristics that include sediment grain size, porosity, carbon and nitrogen content, trace-element, and chlorophyll concentrations are presented in this report. In addition, the infaunal data are comprised of both macrofaunal and meiofaunal communities.

From August 6th to September 9th, 2014, Fisheries and Oceans Canada conducted a baseline survey of marine fishes and their habitats on the Canadian Beaufort Shelf and slope. Sampling was conducted from the F/V Frosti at 56 stations along thirteen transects, with an additional three stations not located on transects. Standardized sampling was conducted on the transects at pre-determined depth stations (20-40, 75, 200, 350, 500, 750, and 1000 m) using a variety of sampling equipment including benthic fishing trawls, plankton nets, sediment cores, and CTD and water sample profiles. Presented here is the information on the sampling locations, and the sampling gear deployed at each station.

Digitized DAO accessions from natural occurrences, cultivated, and hybrid specimens. Records are in various stages of review and completion. This dataset will be updated as digitization continues. Countries of collection follow guidance from the Government of Canada resource “Data Reference Standard on Countries, Territories, and Geographic areas” available online: https://ouvert.canada.ca/data/dataset/cac6fd9f-594a-4bcd-bf17-10295812d4c5/resource/bdb33e8c-53ef-4bae-9493-35f343191c02. Dataset Type: Occurrence Specimen Type: Preserved specimen

Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the environment by organisms from various sources (secretions, faeces, gametes, tissues, etc.). It is a complementary tool to standard sampling methods for the identification of biodiversity. This project provides a list of fish and marine mammal species whose DNA has been detected in water samples collected between 2019 and 2021 using the mitochondrial marker MiFish (12S). The surveys were carried out in the summer of 2019 (July 14-18) and (July 30 - August 5), in the fall of 2020 (October 27-28) and in the summer-fall of 2021 (May 31 - June 3 ) and (August 24-25) between Forestville and Godbout (Haute-Côte-Nord). Sampling was carried out between 1-50 meters depth in 91 stations, with 1 to 3 replicates per station. Two liters of water were filtered through a 1.2 µm fiberglass filter. DNA extractions were performed with the DNeasy Blood and Tissues or PowerWater extraction kit (Qiagen). Negative field, extraction and PCR controls were added at the different stages of the protocol. The libraries were prepared either by Génome Québec (2019, 2020) or by the Genomics Laboratory of the Maurice-Lamontagne Institute (2021), then sequenced on a NovaSeq 4000 PE250 system by Génome Québec. The bioinformatics analysis of the sequences obtained was carried out using an analysis pipeline developed in the genomics laboratory. A first step made it possible to obtain a table of molecular operational taxonomic units (MOTU) using the cutadapt software for the removal of the adapters and the R package DADA2 for the filtration, the fusion, removal of chimeras and compilation of data. The MOTUs table was then corrected using the R package metabaR to eliminate the tag-jumping and take contaminants into consideration. Samples showing a strong presence of contaminating MOTUs were removed from the dataset. The MOTUs were also filtered to remove all remaining adapter sequences and also retain only those of the expected size (around 170 bp). Finally, taxonomic assignments were made on the MOTUs using the BLAST+ program and the NCBI-nt database. Taxonomic levels (species, genus or family) were assigned using a best match method (Top hit), with a threshold of 95%. Only assignments at the level of fish and marine mammals were considered, and the taxa detected were compared to a list of regional species, and corrected if necessary. The species detections of the different replicas have been combined. The file provided includes generic activity information, including site, station name, date, marker type, assignment types used for taxa identification, and a list of taxa or species. The list of taxa has been verified by a biodiversity expert from the Maurice-Lamontagne Institute. This project was funded by Fisheries and Oceans Canada's Coastal Environmental Baseline Data Program under the Oceans Protection Plan. This initiative aims to acquire baseline environmental data that contributes to the characterization of significant coastal areas and supports evidence-based assessments and management decisions to preserve marine ecosystems. Data were also published on SLGO platform : https://doi.org/10.26071/ogsl-2239bca5-c24a

The Great Lakes Fish Biodiversity Science Database is a compilation of fish community and habitat data from DFO Science surveys, primarily related to freshwater fishes of conservation concern in the Great Lakes basin. Data include: sampling site location, date, fish species and counts, and associated habitat information. Project-specific details including purpose/objectives and study methodology are often reported in the DFO Canadian data report of fisheries and aquatic sciences series.

Mean fork length for returning adult Atlantic salmon (Salmo salar) that spent one or two years (1SW and 2SW, respectively) in the marine environment for 16 rivers throughout Eastern Canada spanning an 10° latitudinal gradient. These data were collected as part of monitoring programs for Atlantic salmon returns run by Fisheries and Oceans Canada (DFO). Data from at least eight populations, spanning all provinces in Atlantic Canada, over a 50-year period (1970-2021) will be included in this meta-analysis. These data, as well as mean fork length for returning adult Atlantic salmon from three rivers in Québec (1979-2021) collected as part of monitoring programs for Atlantic salmon returns run by the Ministère de l’Environnement, de la Lutte contre les changements climatiques, de la Faune et des Parcs, Government of Québec, are also available at: http://doi.org/10.17605/OSF.IO/78PWT.

A research survey on American lobster (Homarus americanus) and rock crab (Cancer irroratus) has been carried out annually on the Magdalen Islands since 1995 to assess the abundance and structure of populations in this area. The survey is carried out during the first two weeks of September and covers the southern part of the Magdalen Islands, from "Baie de Plaisance" to "Grande-Entrée", extending slightly eastwards between "Havre-aux-Maisons" and "Grande-Entrée". The survey lasts 8 to 15 days, depending of the weather conditions, and covers a maximum of 48 stations. Approximately half of the stations are surveyed in duplicate (two tows per station). The tows always cover 500 meters, with a slightly variable trawl opening (as explained above), averaging around 10 meters. The gear used is a Nephrops trawl, a benthic trawl originally developed for langoustine fishing in Brittany, but slightly modified to target lobster. The trawl is deployed from the CCGS Leim and the harvested organisms are hauled aboard and sorted. Cephalothorax length, sex and shell stage are recorded for all lobsters. This is supplemented by information on reproductive conditions for certain size classes, and dissections of 25 males and 25 females per mission. Rock crabs are also included in the survey and are counted with additional measurements of shell width, sex and shell condition that are recorded on predetermined stations. For other stations individuals data are collected depending on the time available between trawl hauls. The publication contains 4 files; the "Information_stations" file which contains the data of the stations, the "Data_homard_lobster_survey" file which contains the measurements of each lobster, the "Nombre_crabe_crab_number" file which contains the count of rock crabs, the "Mesure_crabe_crab_measurement" file contains the characteristics measured for each crab. Each of the files can be linked by the "date", "st", "tr" columns. The “bat” column notes the boat code, because the gear is not deployed in the same way on each boat. *This record consist of raw data and quality has not been verified Associated species are identified and semi-quantitatively counted directly on the sorting table, and the results are presented in the following publication: https://open.canada.ca/data/en/dataset/99cb7034-f3d5-4da4-a5bc-e81315cfb8eb

This dataset contains annual mean stream water flow/discharge data derived from daily means for headwater streams draining forested hillslopes measured at stream catchments C31, C32, C33, C34, C35, C37, C38, C39, C42, C46, C47, C49, and C50 in the Turkey Lakes Watershed, approximately 60 km northwest of Sault Ste. Marie, Ontario, Canada. This data set is recorded as annual mean flow by calendar year (January-December in litres per second), annual mean flow by water year (October to September in litres per second), and annual number of zero flow days by water year. Daily mean flows that were used to derive this data set were recorded from 1981-2012 by the Great Lakes Forestry Centre, and are reported for 1981-2011 due to some inaccuracies throughout the 2012 data. Hydrological gauging stations employ "flow-control" 120 degree V-notch weirs (catchments 31, 33, 34, 37, 39, 42, 46, and 47), 90 degree V-notch weirs (catchments 32, 35, and 49), and 60 degrees V-notch weirs (catchment 38) to facilitate monitoring of stream discharge. Water "stage" or depth within the structure (e.g. in the pool behind the weir notch) is automatically and continuously recorded by chart recorders (Leupold & Stevens A-71 SE Water Level Recorder) from 1981-2003. Capacitance rods (Trutrack WT-HR 1000) installed in stilling wells replaced the chart recorders over the period of 2002 to 2003 and were used until 2012. The capacitance rods logged data at 1 hour intervals for the majority of their use and then averaged to a daily rate. Manual stage measurements have been taken intermittently when synoptic water chemistry samples were taken throughout the years. Stage data are then converted to a continuous record of flow using the relationship between stage and discharge measurements.

PURPOSE: From August 1st to September 11th, 2014, Fisheries and Oceans Canada conducted a baseline survey of marine fishes and their habitats in the southern Canadian Beaufort Sea and Amundsen Gulf as part of the Beaufort Regional Environmental Assessment (BREA) called the Beaufort Sea Marine Fishes Project (BSMFP). Sampling was conducted from the F/V Frosti at 54 stations along 14 transects. Standardized sampling was conducted at pre-determined depth stations (20-1500 m) using benthic trawling nets. The BSMFP is the first research project to use large research trawls to assess the biodiversity and abundance of offshore marine fishes in this area. In total, 42 species of fish were caught. This report contains information on fishing net deployments, catch per unit effort (CPUE), and basic biological data for all fishes caught. DESCRIPTION: Basic biological data for all fish caught during the 2014 BSMFP expedition. Includes identification, weight, length (total, fork, and, standard), liver weight, gonad weight, sex and maturity level. PARAMETERS COLLECTED: family species weight total length fork length standard length liver weight gonad weight sex maturity SAMPLING METHODS: Various trawl types.