The assessment of the status of eelgrass (Zostera marina) beds at the bay-scale in turbid, shallow estuaries is problematic. The bay-scale assessment (i.e., tens of km) of eelgrass beds usually involves remote sensing methods such as aerial photography or satellite imagery. These methods can fail if the water column is turbid, as is the case for many shallow estuaries on Canada’s eastern seaboard. A novel towfish package was developed for the bay-scale assessment of eelgrass beds irrespective of water column turbidity. The towfish consisted of an underwater video camera with scaling lasers, sidescan sonar and a transponder-based positioning system. The towfish was deployed along predetermined transects in three northern New Brunswick estuaries. Maps were created of eelgrass cover and health (epiphyte load) and ancillary bottom features such as benthic algal growth, bacterial mats (Beggiatoa) and oysters. All three estuaries had accumulations of material reminiscent of the oomycete Leptomitus, although it was not positively identified in our study. Tabusintac held the most extensive eelgrass beds of the best health. Cocagne had the lowest scores for eelgrass health, while Bouctouche was slightly better. The towfish method proved to be cost effective and useful for the bay-scale assessment of eelgrass beds to sub-meter precision in real time. Cite this data as: Vandermeulen H. Data of: Bay Scale Assessment of Eelgrass Using Sidescan and Video - Cocagne 2008. Published: November 2019. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/431c815e-65f0-477b-9389-060fa41ec955

In marine ecosystems, the combination of multiple, co-occurring human activities can degrade habitats, undermining the very ecosystem services on which human societies depend. To examine the combined risk to marine habitats from multiple, overlapping human activities and stressors in Atlantic Canadian waters, a cumulative habitat risk assessment was conducted across four bioregions: (1) Scotian Shelf-Bay of Fundy, (2) Northern Gulf of St. Lawrence (3) Southern Gulf of St. Lawrence and (4) Newfoundland and Labrador. This analysis combined spatial information for 20 different marine habitats and 36 human activities across five different sectors (climate change, land-based, marine, coastal, and commercial fishing) using a spatially explicit, exposure-consequence risk framework. This dataset provides the cumulative habitat risk map for Atlantic Canadian marine waters at a 1 km² resolution, as well as the habitat map used in the risk analysis. This project was funded by Fisheries and Oceans Canada through a Competitive Science Research Fund (CSRF) grant. For further information concerning specifics of the maps and methods, contact the data provider. References Arkema, K.K., Verutes, G., Bernhardt, J.R., et al. 2014. Assessing habitat risk from human activities to inform coastal and marine spatial planning: a demonstration in Belize. Environ. Res. Lett. 9(11): 114016. Cite this data as: Kelly, N.E. and Murray, C. Cumulative risk maps for marine habitats of Atlantic Canada. Published: April 2026. Coastal Ecosystems Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth NS.

EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, acidity and contaminants. The chemicals chosen reflect importance to the Marine Strategy Framework Directive (MSFD). ITS-90 water temperature and Water body salinity variables have been also included (as-is) to complete the Eutrophication and Acidity data. If you use these variables for calculations, please refer to SeaDataNet for having the quality flags: https://www.seadatanet.org/Products/Aggregated-datasets . This aggregated dataset contains all unrestricted EMODnet Chemistry data on Eutrophication and Acidity (16 parameters with quality flag indicators), and covers the Northeast Atlantic Ocean (40W) with 106885 CDI records (106339 Vertical profiles and 546 Time series). Vertical profiles temporal range is from 1921-10-15 to 2017-09-30. Time series temporal range is from 1974-06-14 to 2017-08-01. Data were aggregated and quality controlled by 'IFREMER / IDM / SISMER - Scientific Information Systems for the SEA' from France. Regional datasets concerning eutrophication and acidity are automatically harvested and resulting collections are aggregated and quality controlled using ODV Software and following a common methodology for all Sea Regions ( https://doi.org/10.6092/9f75ad8a-ca32-4a72-bf69-167119b2cc12). When not present in original data, Water body nitrate plus nitrite was calculated by summing up the Nitrates and Nitrites. Same procedure was applied for Water body dissolved inorganic nitrogen (DIN) which was calculated by summing up the Nitrates, Nitrites and Ammonium. Parameter names are based on P35, EMODnet Chemistry aggregated parameter names vocabulary, which is available at: https://www.bodc.ac.uk/resources/vocabularies/vocabulary_search/P35/. Detailed documentation is available at: https://doi.org/10.6092/ec8207ef-ed81-4ee5-bf48-e26ff16bf02e The aggregated dataset can be downloaded as ODV spreadsheet, which is composed of metadata header followed by tab separated values. This worksheet can be imported to ODV Software for visualisation (More information can be found at: https://www.seadatanet.org/Software/ODV ). The original datasets can be searched and downloaded from EMODnet Chemistry Download Service: https://emodnet-chemistry.maris.nl/search

The large, habitat-forming bubblegum coral, Paragorgia arborea, is a vulnerable marine ecosystem indicator with an antitropical distribution. Dense aggregations of the species have been protected from bottom-contact fishing in the Scotian Shelf bioregion off Nova Scotia, Canada in the northwest Atlantic Ocean. Recently, basin-scale habitat suitability ensemble modeling has projected an alarming loss of 99% of suitable habitat for this species across the North Atlantic by 2100. Here, a regional reassessment of the predicted distribution of this species in the bioregion, using both machine learning (random forest) and generalized additive model (GAM) frameworks, including projection to 2046−2065, was undertaken. Extrapolation diagnostics were applied to determine the degree to which the models projected into novel covariate space (i.e., extrapolation) in order to avoid erroneous inferences. The best predictors of the species’ distribution were a suite of temporally-invariant terrain variables that identified suitable habitat along the upper continental slope. Additional predictors, projected to vary with future ocean climatologies, identified areas of the upper slope in the eastern portion of the study area that will remain within suitable ranges for P. arborea at least through to the mid-century. Additionally, 3-D Lagrangian particle tracking simulations indicated potential for both connectivity among known occurrence sites and existing protected areas, and for colonization of unsurveyed areas predicted to have suitable habitat, from locations of known occurrence. These results showed that extirpation of this iconic species from the Scotian Shelf bioregion is unlikely over the next decades. Potential climate refugia were identified and results presented in the context of protected area network design properties of representativity, connectivity, adequacy, viability and resilience. Here we provide the interpolated environmental predictor variables used in present day and future species distribution models. Predicted surfaces from random forest (RF) and generalized additive models (GAM) are provided for present day and projected (RCP4.5 and RCP8.5 2045-2065) time frames. Outputs after applying extrapolation diagnostic tools (calculated using the R package dsmextra) are provided for each model. Climate change refugia for this species under the RCP4.5 2045-2065 projections showing analogue conditions are also provided. Explanations for the surfaces can be found in Wang, Murillo & Kenchington (2022) and in the associated supplementary files. Reference: Wang S, Murillo FJ and Kenchington E (2022) Climate-Change Refugia for the Bubblegum Coral Paragorgia Arborea in the Northwest Atlantic. Front. Mar. Sci. 9:863693. doi: 10.3389/fmars.2022.863693

Nearshore marine construction activities often involve projects conducted directly in or adjacent to eelgrass beds and can have detrimental effects on eelgrass health, through physical destruction of beds, smothering of plants by sediment, and light reduction from turbidity. A liquefied natural gas (LNG) marine terminal is proposed to be constructed near Goldboro in Isaacs Harbour on the Eastern shore of Nova Scotia in an area where sediments are contaminated with heavy metals from historical goldmining tailings. We conducted a pre-impact assessment of the eelgrass beds in Isaacs Harbour and in adjacent contaminated and non-contaminated harbours. We used underwater video to precisely map the eelgrass bed in the direct construction footprint in Isaacs Harbour. We surveyed 169 stations along ~40 km of coastline from Wine Harbour to New Harbour to identify eelgrass presence or absence in the nearby region and provide data on the distribution and abundance of other sensitive fish habitat such as kelp and other macrophytes. Sediment samples were collected and analyzed for grain size, organic matter content and heavy metal contamination. We also collected eelgrass plants to assess plant condition using morphological and physiological metrics, and heavy metal contamination in plant tissues. The overall condition of eelgrass plants in the surveyed area fell within the range of healthy plant characteristics (morphometrics and carbohydrates reserves) seen elsewhere along the Atlantic coast. However, a few stations displayed high arsenic and mercury contamination in sediments, which translated in some cases to high contamination in eelgrass rhizomes and leaves. There would be significant risk of impact on benthic habitat and contamination of marine biota from resuspension of sediments during a construction and operation of a ship terminal in Isaacs Harbour. This pre-impact assessment will allow DFO to assess the LNG terminal construction proposal and develop appropriate mitigation and monitoring procedures. Collected data will also be used for habitat-forming species distribution modeling to inform marine spatial and conservation planning. Vercaemer, B., O’Brien, J. M., Guijarro-Sabaniel, J. and Wong, M. C. 2022. Distribution and condition of eelgrass (Zostera marina) in the historical goldmining region of Goldboro, Nova Scotia. Can. Tech. Rep. Aquat. Sci. 3513: v + 67 p. Cite this data as: Vercaemer, B., O’Brien, J. M., Guijarro-Sabaniel, J., Wong, M. Data of: Eelgrass (Zostera marina) study in the historical goldmining region of Goldboro, Nova Scotia (2020). Published: February 2023. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/ee88aa17-fd30-4d4a-8924-897fd47cf560

Moving 6-year analysis of Water body silicate in the Baltic Sea. Four seasons (March-May, June-August, September-November, December-February). Every year of the time dimension corresponds to a 6-year centred average. Periods span between 1980-1985 and 2013-2018. Analyses for depths (m) (HELCOM standard depths): 0, 5, 10, 15, 20, 30, 40, 50, 60, 70, 80, 90, 100, 125, 150, 175, 200, 225, 250, 275, 300. Data Sources: observational data from SeaDataNet/EMODnet Chemistry Data Network. Description of DIVA analysis: Geostatistical data analysis by DIVA (Data-Interpolating Variational Analysis) tool. GEBCO Grid (30 arc-seconds) topography is used for the contouring preparation. Files contain analysed fields, error fields and combined field with the deepest value for each grid point selected. Also pre-masked fields using relative error threshold 0.3 and 0.5 are included. In the analyses the Correlation length in the horizontal direction were fixed to 80 km and in the vertical direction to 25 m. Signal to noise ratio were fixed to 1.0. Background fields were created using data for the given time period and season. Log transformation was used in the analyses. No detrending, advection constraints or weighting are applied. Unit is umol/l.

The Ocean Data Inventory database is an inventory of all of the oceanographic time series data held by the Ocean Science Division at the Bedford Institute of Oceanography. The data archive includes about 5800 current meter and acoustic doppler time series, 4500 coastal temperature time series from thermographs, as well as a small number (200) of tide gauges. Many of the current meters also have temperature and salinity sensors. The area for which there are data is roughly defined as the North Atlantic and Arctic from 30° - 82° N, although there are some minor amounts of data from other parts of the world. The time period is from 1960 to present. The database is updated on a regular basis.

To estimate Grey Seal (Halichoerus grypus) pup production, photographic aerial surveys were conducted of the major Grey Seal breeding colonies in Canadian waters. The last survey was completed in January 2021. A total of 72,209 pups were counted on digital imagery from Sable Island, the largest breeding colony. Reconnaissance flights found no new colonies along the Atlantic coast of Nova Scotia and New Brunswick. Pup developmental stage surveys were undertaken on the ground or from helicopter at the seven largest breeding colonies to describe the birth distribution and correct the pup count for the estimate of pups born after the aerial photographic survey. The estimated number of pups born on Sable Island was 76,600 (SE = 2,900) and for Coastal Nova Scotia was 4,700 (SE = 550). For Sable Island, this is the first estimate of pup production since the 1960s that has not been a significant increase. Sable Island accounts for 77.5% of total pup production in Canada, and the change in trend in pup production on Sable Island is reflected in the trend in total pup production. Pup production in the Gulf of St. Lawrence continues to fluctuate with little evidence of trend over the past several decades, while at the more recently-established breeding colonies in southwest Nova Scotia, pup production continues to increase. In February 2026, the time series of grey seal pup production estimates for Maritimes Region was made open source. The open data was set up with no abbreviations or codes and restricted to just Maritimes Region. Notably there are counts in the dataset provided not linked to specific breeding colonies, for the miscellaneous locations the latitude and longitude are for roughly center of the colonies or region. Cite this data as: den Heyer., C. Data of Grey Seal Pup Production in Canadian Water. Published: April 2026. Ocean Ecosystems Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth NS. https://open.canada.ca/data/en/dataset/ea8962b2-0d75-4500-a3de-d631a1e5308f

A towfish containing sidescan and video hardware was used to map eelgrass in two shallow northern New Brunswick estuaries. The sidescan and video data were useful in documenting suspected impacts of oyster aquaculture gear and eutrophication on eelgrass. With one boat and a crew of three, the mapping was accomplished at a rate of almost 10 km2 per day. That rate far exceeds what could be accomplished by a SCUBA based survey with the same crew. Moreover, the towfish survey applied with a complementary echosounder survey is potentially a more cost effective mapping method than satellite based remote sensing. Cite this data as: Vandermeulen H. Data of: Bay Scale Assessment of Eelgrass Beds Using Sidescan and Video - Richibucto 2007. Published: October 2017. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/ca7af8ba-8810-4de5-aa91-473613b0b38d

The Coastal Infrastructure Vulnerability Index (CIVI) was jointly developed by DFO Science Branch, Small Craft Harbours (SCH) Program and the Economic Analysis and Statistics Directorate. The CIVI was designed with the intent of developing a climate change adaptation tool that would support management decisions regarding the long-term infrastructure planning for SCH sites. The CIVI provides a numerical indication of the relative vulnerability of small craft harbour sites to the effects of climate change and was designed with three component sub-indices: Environmental Exposure (natural forces), Infrastructure, and Socio-economic. The spatial component for the coastline was derived from the CanVec 1:50,000 hydrographic layer (https://open.canada.ca/data/en/dataset/9d96e8c9-22fe-4ad2-b5e8-94a6991b744b). This layer combines the 1:50,000 CanVec coastline of Canada with the following CIVI environmental exposure variables: - projected sea level rise (for the decades 2030, 2040,...2100) in meters - wave height (metres) and wind speed (metres/second) - change in sea ice coverage in Atlantic Canada from the 1970s to the 2000s Sea level change: Data for relative sea level change (SLC) were derived from the Intergovernmental Panel on Climate Change Fifth Assessment Report (IPCC 2014, AR5). The projected relative sea level change under the high emission scenario (RCP8.5) was calculated for all years between 2006 and 2100. Sea level change for the years 2030, 2040, 2050, 2060, 2070, 2080, 2090, and 2100 were used. Wind Speed and Wave Height Modelled hindcasts of yearly maximum wind speed (1990 - 2012) and wave height (1990- 2014) were used. This dataset was generated from IFREMER wave hindcasts using the WAVEWATCH III model with wind data from NCEP Climate Forecast System Reanalysis (CFSR) (Saha et al. 2010). Two high resolution (10 minute) grids of Atlantic and Pacific maximum modeled wind speeds and maximum significant wave height were used for southern Canadian coastal areas while a coarser (30 minute) worldwide grid was used for the Arctic areas. From these datasets the mean annual maximum wind speed over 23 years and the mean maximum significant wave height over 25 years were calculated. Change in sea ice coverage: Sea ice data from the Canadian Ice Service were acquired for Atlantic and Arctic Canada, representing percent ice coverage for each week over four decades (1970s, 1980s, 1990, 2000s). For each decade a single dataset was calculated to represent the sum of all weeks with ice coverage in excess of 50%, with a maximum possible score of 52 weeks for each decade. To measure change in ice duration, the summary mapsheet from the 2000s was subtracted from the 1970s summary mapsheet. The final dataset represents the change between the 1970s and 2000s in the number of weeks with ice concentrations greater than 50%. A positive number indicates a reduction in weeks of ice coverage, a negative number an increase in ice coverage. The data for individual small craft harbours included here contains predicted sea level change for the decades between 2030 and 2100, wave height, windspeed, change in sea ice coverage, population, and the final environmental exposure sub-index value (ESI). The population for each harbour is derived from the 2016 Census of Canada data for the Census subdivision (CSD) geographic unit. Reference: Relative sea-level projections for Canada based on the IPCC Fifth Assessment Report and the NAD83v70VG national crustal velocity model https://doi.org/10.4095/327878 IPCC, 2014. Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Field, C.B., V.R. Barros, D.J. Dokken, K.J. Mach, M.D. Mastrandrea, T.E. Bilir, M. Chatterjee, K.L. Ebi, Y.O. Estrada, R.C. Genova, B. Girma, E.S. Kissel, A.N. Levy, S. MacCracken, P.R. Mastrandrea, and L.L. White (eds.)]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 1132 pp. Cite this data as: Greenan B. and Greyson P. Coastal Environmental Exposure Layer. Published March 2022. Ocean Ecosystem Science Division, Fisheries and Oceans Canada, Dartmouth, N.S.